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Structural genomics

Whole-genome comparison of two same-genotype macrolide-resistant Bordetella pertussis isolates collected in Japan

Kentaro Koide, Yumi Uchitani, Takahiro Yamaguchi, Nao Otsuka, Masataka Goto, Tsuyoshi Kenri, Kazunari Kamachi

published 15 Feb 2024

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Multidimensional scaling methods can reconstruct genomic DNA loops using Hi-C data properties

Ryo Ishibashi

published 17 Aug 2023

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The effect of the genomic GC content bias of prokaryotic organisms on the secondary structures of their proteins

Diana Barceló-Antemate, Fernando Fontove-Herrera, Walter Santos, Enrique Merino

published 04 May 2023

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Machine learning models exploring characteristic single-nucleotide signatures in yellow fever virus

Álvaro Salgado, Raquel C. de Melo-Minardi, Marta Giovanetti, Adriano Veloso, Francielly Morais-Rodrigues, Talita Adelino, Ronaldo de Jesus, Stephane Tosta, Vasco Azevedo, José Lourenco, Luiz Carlos J. Alcantara

published 12 Dec 2022

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A de novo genome assembly of cultivated Prunus persica cv. ‘Sovetskiy’

Maria Gladysheva-Azgari, Kristina Petrova, Svetlana Tsygankova, Irina Mitrofanova, Anatoliy Smykov, Eugenia Boulygina, Natalia Slobodova, Sergey Rastorguev, Fedor Sharko

published 17 Jun 2022

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Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control

Van S. Tompkins, Warren B. Rouse, Collin A. O’Leary, Ryan J. Andrews, Walter N. Moss

published 25 Feb 2022

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Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes

Yanina Panzera, Lucía Calleros, Natalia Goñi, Ana Marandino, Claudia Techera, Sofía Grecco, Natalia Ramos, Sandra Frabasile, Gonzalo Tomás, Emma Condon, María Noel Cortinas, Viviana Ramas, Leticia Coppola, Cecilia Sorhouet, Cristina Mogdasy, Héctor Chiparelli, Juan Arbiza, Adriana Delfraro, Ruben Pérez

published 17 Feb 2022

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Genomic surveillance of SARS-CoV-2 Spike gene by sanger sequencing

Tiago Souza Salles, Andrea Cony Cavalcanti, Fábio Burack da Costa, Vanessa Zaquieu Dias, Leandro Magalhães de Souza, Marcelo Damião Ferreira de Meneses, José Antônio Suzano da Silva, Cinthya Domingues Amaral, Jhonatan Ramos Felix, Duleide Alves Pereira, Stefanella Boatto, Maria Angélica Arpon Marandino Guimarães, Davis Fernandes Ferreira, Renata Campos Azevedo

published 20 Jan 2022

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Structural systems pharmacology: A framework for integrating metabolic network and structure-based virtual screening for drug discovery against bacteria

Elmira Nazarshodeh, Sayed-Amir Marashi, Sajjad Gharaghani

published 14 Dec 2021

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Mutational landscape of SARS-CoV-2 genome in Turkey and impact of mutations on spike protein structure

Ozden Hatirnaz Ng, Sezer Akyoney, Ilayda Sahin, Huseyin Okan Soykam, Gunseli Bayram Akcapinar, Ozkan Ozdemir, Derya Dilek Kancagi, Gozde Sir Karakus, Bulut Yurtsever, Ayse Sesin Kocagoz, Ercument Ovali, Ugur Ozbek

published 06 Dec 2021

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A resource for improved predictions of Trypanosoma and Leishmania protein three-dimensional structure

Richard John Wheeler

published 11 Nov 2021

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DNAH11 compound heterozygous variants cause heterotaxy and congenital heart disease

Hong Xia, Xiangjun Huang, Sheng Deng, Hongbo Xu, Yan Yang, Xin Liu, Lamei Yuan, Hao Deng

published 16 Jun 2021

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Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors

Mangi Kim, Hong Xi, Jongsun Park

published 26 May 2021

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