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Structural genomics

Genomic evolution of SARS-CoV-2 delta variants pre- and post-omicron emergence using alignment-free machine learning models

Sathish Sankar, Kaushika Anandharaman, Pradeesh Selvam, Aswini Jayaraman, Deepak Jayakumar, Pachamuthu Balakrishnan, Marie Larsson, Vijayakumar Velu, Sivadoss Raju, Esaki M. Shankar

published 19 Mar 2026

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Novel adomaviruses associated with blotchy bass syndrome in black basses (Micropterus spp.)

Luke R. Iwanowicz, Clayton D. Raines, Kelsey T. Young, Vicki S. Blazer, Heather L. Walsh, Geoff Smith, Cynthia Holt, John Odenkirk, Tom Jones, Jan-Michael Hessenauer, Morgan A. Biggs, Christopher B. Buck, Justin Greer, R. Scott Cornman

published 17 Dec 2025

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Development of genomic markers for monitoring and research on plethodontid salamanders

Benjamin M. Fitzpatrick, Kara S. Jones, Aaron W. Aunins, Michael S. Eackles, David C. Kazyak

published 06 Nov 2025

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Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

published 16 Oct 2025

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Can random walking on a Hi-C contact matrix lead to data quality improvement? An assessment

Yongqi Liu, Shili Lin

published 23 Sep 2025

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Revealing bioremediation potential of novel indigenous bacteria from oil-contaminated sites in the UAE: A combined bioinformatics and experimental validation

Sara Awni Alkhatib, Sagar Arya, Deema Islayem, Runyararo Memory Nyadzayo, Sharmarke Mohamed, Ahmed F. Yousef, Hector H. Hernandez, Anna-Maria Pappa

published 12 Aug 2025

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Quantifying conformational heterogeneity of 3D genome organization in fruit fly

Samira Mali, Igor S. Tolokh, Erik Cross, Alexey V. Onufriev

published 03 Jul 2025

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Structural impact of synonymous mutations in six SARS-CoV-2 Variants of Concern

Alison Ziesel, Hosna Jabbari

published 01 Jul 2025

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Crystal structures of Mycobacterium tuberculosis and Mycobacterium thermoresistibile glycyl-tRNA synthetases in various liganded states

Michael K. Fenwick, Amy E. DeRocher, Justin K. Craig, Elizabeth K. Harmon, Steve Seibold, Lijun Liu, Kevin P. Battaile, Lynn K. Barrett, Wesley C. Van Voorhis, Isabelle Q. Phan, Bart L. Staker, Sandhya Subramanian, Scott Lovell, Peter J. Myler

published 30 Jun 2025

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A phylogenomic perspective reveals mitochondrial-nuclear discordance and previously undescribed species nested within a widespread East African Reed frog species (Hyperolius substriatus Ahl, 1931)

Lucinda P. Lawson, Gabriela B. Bittencourt-Silva, Werner Conradie, Daniel M. Portik, Simon P. Loader

published 16 Apr 2025

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A genomics learning framework for undergraduates

Laura K. Reed, Adam J. Kleinschmit, Vincent Buonaccorsi, Arthur G. Hunt, Douglas Chalker, Jason Williams, Christopher J. Jones, Juan-Carlos Martinez-Cruzado, Anne Rosenwald

published 09 Jan 2025

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Chromosomal gene order defines several structural classes of Staphylococcus epidermidis genomes

Naya Nagy, Paul Hodor

published 04 Oct 2024

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An integrated in-silico approach for drug target identification in human pathogen Shigella dysenteriae

Hurria Qureshi, Amina Basheer, Wasim Sajjad, Muhammad Faheem, Syed Babar Jamal

published 16 May 2024

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