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Split-decomposition method

An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

published 05 Mar 2009

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Evidence for Co-Evolution between Human MicroRNAs and Alu-Repeats

Stefan Lehnert, Peter Van Loo, Pushpike J. Thilakarathne, Peter Marynen, Geert Verbeke, Frans C. Schuit

published 11 Feb 2009

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Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

Holly J. Atkinson, John H. Morris, Thomas E. Ferrin, Patricia C. Babbitt

published 03 Feb 2009

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Ultraconserved Elements in the Olig2 Promoter

Christina T. L. Chen, David I. Gottlieb, Barak A. Cohen

published 16 Dec 2008

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FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets

Weizhong Li, John C. Wooley, Adam Godzik

published 10 Oct 2008

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Conserved Secondary Structures in Aspergillus

Abigail Manson McGuire, James E. Galagan

published 30 Jul 2008

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Local Alignment Refinement Using Structural Assessment

Pierre Chodanowski, Aurélien Grosdidier, Ernest Feytmans, Olivier Michielin

published 09 Jul 2008

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An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

published 02 Jul 2008

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SP⁵: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model

Wei Zhang, Song Liu, Yaoqi Zhou

published 04 Jun 2008

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