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Shotgun sequencing

Exploring extreme environments in Türkiye for novel P450s through metagenomic analysis

Hande Mumcu, Julian Zaugg, Irem Keles, Aycan Kayrav, Nurgul Balci, David R. Nelson, Philip Hugenholtz, Elizabeth M. J. Gillam, Nevin Gul Karaguler

published 08 Sep 2025

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Extensive novel diversity and phenotypic associations in the dromedary camel microbiome are revealed through deep metagenomics and machine learning

Fathi A. Mubaraki

published 17 Jul 2025

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DNA extraction protocols for animal fecal material on blood spot cards

Ann-Katrin Llarena, Thomas H. A. Haverkamp, Wenche Støldal Gulliksen, Kristin Herstad, Arne Holst-Jensen, Eystein Skjerve, Lisbeth Rannem, Sabrina Rodriguez-Campos, Øivind Øines

published 12 May 2025

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Examining the bacterial diversity including extracellular vesicles in air and soil: implications for human health

Hyunjun Yun, Ji Hoon Seo, Yoon-Keun Kim, Jinho Yang

published 01 Apr 2025

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Exploring bioactive compound origins: Profiling gene cluster signatures related to biosynthesis in microbiomes of Sof Umer Cave, Ethiopia

Abu Feyisa Meka, Gessesse Kebede Bekele, Musin Kelel Abas, Mesfin Tafesse Gemeda

published 06 Mar 2025

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Comparing subsampling strategies for metagenomic analysis in microbial studies using amplicon sequence variants versus operational taxonomic units

Daniel Segura, Divya Sharma, Osvaldo Espin-Garcia

published 30 Dec 2024

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Aquificae overcomes competition by archaeal thermophiles, and crowding by bacterial mesophiles, to dominate the boiling vent-water of a Trans-Himalayan sulfur-borax spring

Nibendu Mondal, Subhajit Dutta, Sumit Chatterjee, Jagannath Sarkar, Mahamadul Mondal, Chayan Roy, Ranadhir Chakraborty, Wriddhiman Ghosh

published 25 Oct 2024

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Gut microbiota composition of the isopod Ligia in South Korea exposed to expanded polystyrene pollution

Young-Mi Lee, Kwang-Min Choi, Seong Hee Mun, Je-Won Yoo, Jee-Hyun Jung

published 07 Aug 2024

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Microbiota composition effect on immunotherapy outcomes in colorectal cancer patients: A systematic review

Suad Mohamed Ajab, Sumaya Hasan Zoughbor, Lena Abdulbaset Labania, Linda Mari Östlundh, Hiba Salaheldin Orsud, Marie Antonette Olanda, Obaid Alkaabi, Shamma Hamad Alkuwaiti, Shaikha Mohammed Alnuaimi, Zakeya Al Rasbi

published 24 Jul 2024

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Perturbations in gut microbiota composition in schizophrenia

YiMeng Wang, SiGuo Bi, XiaoLong Li, YuTao Zhong, DongDong Qi

published 03 Jul 2024

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Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

Daryna Zavadska, Nicolas Henry, Adrià Auladell, Cédric Berney, Daniel J. Richter

published 06 Jun 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Revealing the microbiome diversity and biocontrol potential of field Aedes ssp.: Implications for disease vector management

Apolinar M. Hernández, Luis D. Alcaraz, Cristóbal Hernández-Álvarez, Miguel F. Romero, Angélica Jara-Servín, Hugo Barajas, Carlos M. . Ramírez, Mariana Peimbert

published 29 Apr 2024

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