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Shotgun sequencing

Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism

John Archer, Jan Weber, [ ... ], Miguel E. Quiñones-Mateu

CREST – Classification Resources for Environmental Sequence Tags

Anders Lanzén, Steffen L. Jørgensen, [ ... ], Tim Urich

Choosing the Best Plant for the Job: A Cost-Effective Assay to Prescreen Ancient Plant Remains Destined for Shotgun Sequencing

Nathan Wales, J. Alberto Romero-Navarro, Enrico Cappellini, M. Thomas P Gilbert

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Colin F. Davenport, Jens Neugebauer, [ ... ], Frauke Sprengel

An Improvement of Shotgun Proteomics Analysis by Adding Next-Generation Sequencing Transcriptome Data in Orange

Jiaping Song, Renjie Sun, [ ... ], Yong Zhang

Reconstruction of Ribosomal RNA Genes from Metagenomic Data

Lu Fan, Kerensa McElroy, Torsten Thomas

Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research

Jumpstart Consortium Human Microbiome Project Data Generation Working Group

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, [ ... ], Makedonka Mitreva

Novel Bacterial Taxa in the Human Microbiome

Kristine M. Wylie, Rebecca M. Truty, [ ... ], Katherine S. Pollard

Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

Todd A. Castoe, Alexander W. Poole, [ ... ], David D. Pollock

Beyond Bacteria: A Study of the Enteric Microbial Consortium in Extremely Low Birth Weight Infants

Mariam Susan LaTuga, Joseph Christopher Ellis, [ ... ], Patrick C. Seed

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

Li C. Xia, Jacob A. Cram, [ ... ], Fengzhu Sun

Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment

Jessica L. Danzeisen, Hyeun Bum Kim, [ ... ], Timothy J. Johnson

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