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Sequence similarity searching

A Conjugate Gradient Algorithm with Function Value Information and N-Step Quadratic Convergence for Unconstrained Optimization

Xiangrong Li, Xupei Zhao, Xiabin Duan, Xiaoliang Wang

CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics

Mohit Verma, Vinay Kumar, [ ... ], Mukesh Jain

FMiR: A Curated Resource of Mitochondrial DNA Information for Fish

Naresh Sahebrao Nagpure, Iliyas Rashid, [ ... ], Uttam Kumar Sarkar

CoMeta: Classification of Metagenomes Using k-mers

Jolanta Kawulok, Sebastian Deorowicz

Use of Composite Protein Database including Search Result Sequences for Mass Spectrometric Analysis of Cell Secretome

Jihye Shin, Gamin Kim, [ ... ], Cheolju Lee

CRISPR MultiTargeter: A Web Tool to Find Common and Unique CRISPR Single Guide RNA Targets in a Set of Similar Sequences

Sergey V. Prykhozhij, Vinothkumar Rajan, Daniel Gaston, Jason N. Berman

Div-BLAST: Diversification of Sequence Search Results

Elif Eser, Tolga Can, Hakan Ferhatosmanoğlu

MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

Sophie S. Abby, Bertrand Néron, [ ... ], Eduardo P. C. Rocha

Indexes of Large Genome Collections on a PC

Agnieszka Danek, Sebastian Deorowicz, Szymon Grabowski

GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

Amino Acid Properties Conserved in Molecular Evolution

Witold R. Rudnicki, Teresa Mroczek, Paweł Cudek

Common Attentional Constraints in Visual Foraging

Árni Kristjánsson, Ómar I. Jóhannesson, Ian M. Thornton

PASTEC: An Automatic Transposable Element Classification Tool

Claire Hoede, Sandie Arnoux, [ ... ], Hadi Quesneville

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