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Sequence motif analysis

Spatial and genetic dynamics of Plasmodium falciparum histidine-rich protein2 in sub-Saharan Africa

Kaothar O. Lambe, Favour Adeloye, Jennifer A. Oboh, Halima Abdulsalam, Martin M. Meremikwu, Grant L. Hughes, Eva Heinz, Mary A. Oboh

published 07 Oct 2026

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A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries

Alexander D. Duggan, Matthew P. Newman, David R. McMillen

published 17 Sep 2026

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Diversity at the HYP1 locus in potato cyst nematodes does not result from developmentally-programmed somatic mutations

Vincent C. T. Hanlon, Unnati Sonawala, Cian A. A. Raza, Luisa Kalkert, George Harpum, Lukas A. Burkhardt, Johannes Helder, Sebastian Eves-van den Akker

published 15 Sep 2026

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FusionPHI: A phage-host interaction prediction network model based on attention-driven multi-modal feature fusion

Xiangjun Li, Ruitao Li, Zhui Tu, Qingting Wei

published 21 Aug 2026

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ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

published 10 Aug 2026

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Evolutionary patterns of the mitochondrial control region in vertebrates: A large-scale comparative analysis

Mauricio Ochoa Capera, Natalia S. Medina, Paula Montaña-Lozano, Manuela Moreno-Carmona, Antonio Baeza, Carlos Prada-Quiroga

published 10 Jul 2026

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A novel m7G RNA methylation-related signature associated with MAPK signaling pathways in acute ischemic stroke

Wei-Gang Gong, Jian-Wei Lou, Sen Yin, Fang-Pu Yu, Wei Wu

published 23 Jun 2026

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Circ-EnviroPredict: A machine learning-based tool to predict potential involvement of circRNAs with cold and drought stress through a Word2Vec approach

Maria Clara Martins Ferreira, Frederico Schmitt Kremer, Vanessa Galli

published 18 Jun 2026

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ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance

FuGuo Liu, TingLian Lai, WenXia Xu, GuoDong Li

published 03 Jun 2026

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Beyond Clavulanic Acid biosynthesis: Exploring the broad regulatory impact of BldD in Streptomyces clavuligerus ATCC 27064

Luisa F. Patiño, Carlos Caicedo-Montoya, Rigoberto Ríos-Estepa

published 22 Apr 2026

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A cluster of acidic residues in the cytoplasmic domain of SARS-CoV-2 Spike is required for virion-incorporation and infectivity

Charlotte A. Stoneham, Rajendra Singh, Amalia De Leon, Petra Tafelmeyer, Francisco Acosta, Angus Fuori, Michael Anderson, Peter W. Ramirez, Hannah S. Schwartzer-Sperber, Satish Pillai, Mary K. Lewinski, John Guatelli

published 12 Mar 2026

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An upstream secondary DNA motif within the IL3 insulator CTCF binding site is required for enhancer-blocking insulator activity

Sarion R. Bowers, Peter N. Cockerill

published 09 Feb 2026

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Unveiling the molecular mechanisms of burn injury through integrated single-cell and bulk transcriptomic analysis

Xiaoyu Zhu, Neng Huang, Yanyan Pan, Xin Le, Shengyong Cui, Jiliang Li, Youfen Fan

published 27 Jan 2026

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