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Sequence motif analysis

NF-κB/Rel-Mediated Regulation of the Neural Fate in Drosophila

Savita Ayyar, Daniela Pistillo, [ ... ], Pat Simpson

Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

Stein Aerts, Jacques van Helden, Olivier Sand, Bassem A. Hassan

Identification and Classification of Hubs in Brain Networks

Olaf Sporns, Christopher J. Honey, Rolf Kötter

Nullomers: Really a Matter of Natural Selection?

Claudia Acquisti, George Poste, David Curtiss, Sudhir Kumar

SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

Structural and Functional Analyses of Five Conserved Positively Charged Residues in the L1 and N-Terminal DNA Binding Motifs of Archaeal RadA Protein

Li-Tzu Chen, Tzu-Ping Ko, [ ... ], Ting-Fang Wang

Wide-Scale Analysis of Human Functional Transcription Factor Binding Reveals a Strong Bias towards the Transcription Start Site

Yuval Tabach, Ran Brosh, [ ... ], Eytan Domany

Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates

Emmanuel J. Chang, Rashida Begum, Brian T. Chait, Terry Gaasterland

Real-Time Definition of Non-Randomness in the Distribution of Genomic Events

Ulrich Abel, Annette Deichmann, [ ... ], Manfred Schmidt

Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, [ ... ], Cheryl Y. Hayashi

The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network

Duygu Balcan, Alkan Kabakçıoğlu, Muhittin Mungan, Ayşe Erzan

A Novel Motif Identified in Dependence Receptors

Gabriel del Rio, Darci J. Kane, Keith D. Ball, Dale E. Bredesen

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