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Sequence motif analysis

Mosaic divergent repeat interruptions of motif length and sequence, mDRILS, of XDP-linked repeats affect formation of DNA/RNA triplexes & quadruplexes

Niousha Sharifi Soltani, Bita Zamiri, [ ... ], Christopher E. Pearson

Comprehensive Analysis of the AP2/ERF Transcription Factor Family in Schisandra chinensis and Its Implications for secondary metabolism

Kai Qian, Yifen Huang, [ ... ], Wei Nie

Spatial and genetic dynamics of Plasmodium falciparum histidine-rich protein2 in sub-Saharan Africa

Kaothar O. Lambe, Favour Adeloye, [ ... ], Mary A. Oboh

A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries

Alexander D. Duggan, Matthew P. Newman, David R. McMillen

Diversity at the HYP1 locus in potato cyst nematodes does not result from developmentally-programmed somatic mutations

Vincent C. T. Hanlon, Unnati Sonawala, [ ... ], Sebastian Eves-van den Akker

FusionPHI: A phage-host interaction prediction network model based on attention-driven multi-modal feature fusion

Xiangjun Li, Ruitao Li, Zhui Tu, Qingting Wei

ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

Evolutionary patterns of the mitochondrial control region in vertebrates: A large-scale comparative analysis

Mauricio Ochoa Capera, Natalia S. Medina, [ ... ], Carlos Prada-Quiroga

A novel m7G RNA methylation-related signature associated with MAPK signaling pathways in acute ischemic stroke

Wei-Gang Gong, Jian-Wei Lou, [ ... ], Wei Wu

Circ-EnviroPredict: A machine learning-based tool to predict potential involvement of circRNAs with cold and drought stress through a Word2Vec approach

Maria Clara Martins Ferreira, Frederico Schmitt Kremer, Vanessa Galli

ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance

FuGuo Liu, TingLian Lai, WenXia Xu, GuoDong Li

Beyond Clavulanic Acid biosynthesis: Exploring the broad regulatory impact of BldD in Streptomyces clavuligerus ATCC 27064

Luisa F. Patiño, Carlos Caicedo-Montoya, Rigoberto Ríos-Estepa

A cluster of acidic residues in the cytoplasmic domain of SARS-CoV-2 Spike is required for virion-incorporation and infectivity

Charlotte A. Stoneham, Rajendra Singh, [ ... ], John Guatelli

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