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Sequence databases

Could LASCA-imaging of GB-speckles be applied for a high discrimination and typing of pathogenic bacteria?

Onega Ulianova, Sergey Ulyanov, Sergey Zaytsev, Yuriy Saltykov, Alexander Ulyanov, Valentina Feodorova

published 28 Jan 2021

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SeqRepo: A system for managing local collections of biological sequences

Reece K. Hart, Andreas Prlić

published 03 Dec 2020

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Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress

Cuiping Pan, Yongqing Wang, Lian Tao, Hui Zhang, Qunxian Deng, Zhiwu Yang, Zhuoheng Chi, Yunmiao Yang

published 11 Sep 2020

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Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

María P. Martín, Pablo P. Daniëls, David Erickson, John L. Spouge

published 19 Aug 2020

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De novo sequence assembly requires bioinformatic checking of chimeric sequences

Laila Sara Arroyo Mühr, Camilla Lagheden, Sadaf Sakina Hassan, Sara Nordqvist Kleppe, Emilie Hultin, Joakim Dillner

published 10 Aug 2020

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Evidence for contamination as the origin for bacteria found in human placenta rather than a microbiota

Rémi Gschwind, Thierry Fournier, Sean Kennedy, Vassilis Tsatsaris, Anne-Gaël Cordier, Frédéric Barbut, Marie-José Butel, Sandra Wydau-Dematteis

published 10 Aug 2020

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The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens

Duc-Thanh Le, Yu-Qu Zhang, Yong Xu, Li-Xiu Guo, Zhi-Ping Ruan, Kevin S. Burgess, Xue-Jun Ge

published 31 Jul 2020

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Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing

Phillip R. Myer, Tara G. McDaneld, Larry A. Kuehn, Keith D. Dedonder, Michael D. Apley, Sarah F. Capik, Brian V. Lubbers, Gregory P. Harhay, Dayna M. Harhay, John W. Keele, Madison T. Henniger, Brooke A. Clemmons, Timothy P. L. Smith

published 13 Jul 2020

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Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

Sarah J. Vancuren, Scott J. Dos Santos, Janet E. Hill, the Maternal Microbiome Legacy Project Team

published 09 Jul 2020

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Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae)

Daniele Salvi, Emanuele Berrilli, Paola D’Alessandro, Maurizio Biondi

published 21 May 2020

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Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction

Maxim Shapovalov, Roland L. Dunbrack Jr., Slobodan Vucetic

published 06 May 2020

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Genetic variability of human adenovirus type 7 circulating in mainland China

Ru Cai, Naiying Mao, Jingjing Dai, Xingyu Xiang, Jing Xu, Yingwei Ma, Zhong Li, Guangyue Han, Deshan Yu, Jie Yin, Aili Cui, Yan Zhang, Hong Li, Pengbo Yu, Luyuan Guan, Yuling Tian, Liwei Sun, Yan Li, Yamei Wei, Zhen Zhu, Wenbo Xu

published 30 Apr 2020

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OdoBD: An online database for the dragonflies and damselflies of Bangladesh

Md Nur Ahad Shah, Md Kawsar Khan

published 23 Apr 2020

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