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Sequence databases

TextFormats: Simplifying the definition and parsing of text formats in bioinformatics

Giorgio Gonnella

published 26 May 2022

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PltRNAdb: Plant transfer RNA database

Morad M. Mokhtar, Achraf EL Allali

published 23 May 2022

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Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding

Alejandro Damian-Serrano, Elizabeth D. Hetherington, C. Anela Choy, Steven H. D. Haddock, Alexandra Lapides, Casey W. Dunn

published 20 May 2022

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Direct assessment of possible mutations in the 23S rRNA gene encoding macrolide resistance in Chlamydia trachomatis

J. M. van Niekerk, I. H. M. van Loo, M. Lucchesi, S. A. Morré, C. J. P. A. Hoebe, N. H. T. M. Dukers-Muijrers, P. F. G. Wolffs

published 10 May 2022

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Isolation, identification, and whole-genome sequencing of high-yield protease bacteria from Daqu of ZhangGong Laojiu

Yanbo Liu, Junying Fu, Linlin Wang, Zhijun Zhao, Huihui Wang, Suna Han, Xiyu Sun, Chunmei Pan

published 26 Apr 2022

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The predictive potential of different molecular markers linked to amikacin susceptibility phenotypes in Pseudomonas aeruginosa

Wedad M. Nageeb, Helal F. Hetta

published 25 Apr 2022

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Molecular and in silico typing of the lipooligosaccharide biosynthesis gene cluster in Campylobacter jejuni and Campylobacter coli

Amber Hameed, Julian M. Ketley, Alexandra Woodacre, Lee R. Machado, Gemma L. Marsden

published 31 Mar 2022

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Identification of Lagopus muta japonica food plant resources in the Northern Japan Alps using DNA metabarcoding

Taichi Fujii, Kaoru Ueno, Tomoyasu Shirako, Masatoshi Nakamura, Motoyasu Minami

published 10 Mar 2022

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DNA barcoding of the National Museum of Natural History reptile tissue holdings raises concerns about the use of natural history collections and the responsibilities of scientists in the molecular age

Daniel G. Mulcahy, Roberto Ibáñez, Cesar A. Jaramillo, Andrew J. Crawford, Julie M. Ray, Steve W. Gotte, Jeremy F. Jacobs, Addison H. Wynn, Gracia P. Gonzalez-Porter, Roy W. McDiarmid, Ronald I. Crombie, George R. Zug, Kevin de Queiroz

published 04 Mar 2022

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SMRT sequencing of the full-length transcriptome of Gekko gecko

Jianping Jiang, Juan Huo, Yueyun Zhang, Yongli Xu, Chengjian Zhao, Jianhua Miao

published 25 Feb 2022

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A curated dataset of peste des petits ruminants virus sequences for molecular epidemiological analyses

Michael D. Baron, Arnaud Bataille

published 10 Feb 2022

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NGS read classification using AI

Benjamin Voigt, Oliver Fischer, Christian Krumnow, Christian Herta, Piotr Wojciech Dabrowski

published 22 Dec 2021

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Identification of individual root-knot nematodes using low coverage long-read sequencing

Graham S. Sellers, Daniel C. Jeffares, Bex Lawson, Tom Prior, David H. Lunt

published 01 Dec 2021

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