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Sequence databases

Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

published 30 Nov 2023

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ORFanID: A web-based search engine for the discovery and identification of orphan and taxonomically restricted genes

Richard S. Gunasekera, Komal K. B. Raja, Suresh Hewapathirana, Emanuel Tundrea, Vinodh Gunasekera, Thushara Galbadage, Paul A. Nelson

published 25 Oct 2023

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Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen

published 19 Oct 2023

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Molecular characterization of juvenile fish from the Amazon estuary using DNA barcoding approach

Ítalo Lutz, Thais Martins, Felipe Araújo, Charles Ferreira, Paula Santana, Josy Miranda, Suane Matos, Jefferson Sousa, Luciano Pereira, Bianca Bentes, Raimundo da Silva, Ivana Veneza, Iracilda Sampaio, Marcelo Vallinoto, Grazielle Evangelista Gomes

published 28 Sep 2023

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Genetic diversity of thrips populations on Allium species around the world

Bettina Porta, Ben Vosman, Richard G. F. Visser, Guillermo A. Galván, Olga E. Scholten

published 17 Aug 2023

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Development of EST-SSRs based on the transcriptome of Castanopsis carlesii and cross-species transferability in other Castanopsis species

Xiaoru Zhong, Mengyang Xu, Ting Li, Rongxi Sun

published 20 Jul 2023

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Comparative study of multiple approaches for identifying cultivable microalgae population diversity from freshwater samples

Amal A. Badr, Walid M. Fouad

published 07 Jul 2023

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Molecular and morphological characterization of Xylaria karsticola (Ascomycota) isolated from the fruiting body of Macrolepiota procera (Basidiomycota) from Bulgaria

Galena Angelova, Petya Stefanova, Mariya Brazkova, Albert Krastanov

published 29 Jun 2023

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Bioinformatics approach for developing a minimum set of SNP markers for identification of temperate japonica rice varieties cultivated in Spain

Ester Sales, Julia García-Romeral, Concha Domingo

published 23 Jun 2023

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PyKleeBarcode: Enabling representation of the whole animal kingdom in information space

Wandrille Duchemin, David S. Thaler

published 02 Jun 2023

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Introducing an rbcL and a trnL reference library to aid in the metabarcoding analysis of foraged plants from two semi-arid eastern South African savanna bioregions

Danielle Botha, Mornè du Plessis, Frances Siebert, Sandra Barnard

published 19 May 2023

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Taxonomic identification accuracy from BOLD and GenBank databases using over a thousand insect DNA barcodes from Colombia

Nathalie Baena-Bejarano, Catalina Reina, Diego Esteban Martínez-Revelo, Claudia A. Medina, Eduardo Tovar, Sandra Uribe-Soto, Jhon Cesar Neita-Moreno, Mailyn A. Gonzalez

published 24 Apr 2023

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Multigene typing of Giardia Duodenalis isolated from tuberculosis and non-tuberculosis subjects

Hanieh Mohammad Rahimi, Ehsan Javanmard, Ali Taghipour, Ali Haghighi, Hamed Mirjalali

published 23 Mar 2023

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