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Sequence databases

Geographical distribution of mobile genetic elements in microbial communities along the Yucatan coast

Francisco Guillén-Chable, Johnny Omar Valdez Iuit, Luis Alejandro Avila Castro, Carlos Rosas, Enrique Merino, Zuemy Rodríguez-Escamilla, Mario Alberto Martínez-Núñez

published 29 Apr 2024

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Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes

Ksenia G. Kuznetsova, Jakub Vašíček, Dafni Skiadopoulou, Janne Molnes, Miriam Udler, Stefan Johansson, Pål Rasmus Njølstad, Alisa Manning, Marc Vaudel

published 18 Apr 2024

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A fast comparative genome browser for diverse bacteria and archaea

Morgan N. Price, Adam P. Arkin

published 09 Apr 2024

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In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities

Gentile Francesco Ficetola, Alessia Guerrieri, Isabel Cantera, Aurelie Bonin

published 05 Apr 2024

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Comparing modern identification methods for wild bees: Metabarcoding and image-based morphological taxonomic assignment

Cassandra D. Smith, Robert S. Cornman, Jennifer A. Fike, Johanna M. Kraus, Sara J. Oyler-McCance, Carrie E. Givens, Michelle L. Hladik, Mark W. Vandever, Dana W. Kolpin, Kelly L. Smalling

published 02 Apr 2024

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Effect of target gene sequence evenness and dominance on real-time PCR quantification of artificial sulfate-reducing microbial communities

Zhe Du, Sebastian F. Behrens

published 07 Mar 2024

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Molecular characterization of mitochondrial COI gene sequences in Micraspis allardi from Pakistan

Rida Asrar, Mariyam Masood, Imran Bodlah, Ghulam Rasool, Nazia Suleman, Sumaira Yousaf

published 27 Dec 2023

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A taxonomic schema of potential pitfalls in clinical variant analysis based on real-world evidence

Adam Coovadia, Luigi Boccuto, Yenui Chang, Jane DeLuca

published 30 Nov 2023

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MORA and EnsembleTFpredictor: An ensemble approach to reveal functional transcription factor regulatory networks

Kevin Boyer, Louis Li, Tiandao Li, Bo Zhang, Guoyan Zhao

published 30 Nov 2023

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Portable BLAST-like algorithm library and its implementations for command line, Python, and R

Steven Schmid, Aditya Jeevannavar, Timothy R. Julian, Manu Tamminen

published 30 Nov 2023

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ORFanID: A web-based search engine for the discovery and identification of orphan and taxonomically restricted genes

Richard S. Gunasekera, Komal K. B. Raja, Suresh Hewapathirana, Emanuel Tundrea, Vinodh Gunasekera, Thushara Galbadage, Paul A. Nelson

published 25 Oct 2023

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Importance of mobile genetic elements for dissemination of antimicrobial resistance in metagenomic sewage samples across the world

Markus H. K. Johansson, Frank M. Aarestrup, Thomas N. Petersen

published 19 Oct 2023

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Molecular characterization of juvenile fish from the Amazon estuary using DNA barcoding approach

Ítalo Lutz, Thais Martins, Felipe Araújo, Charles Ferreira, Paula Santana, Josy Miranda, Suane Matos, Jefferson Sousa, Luciano Pereira, Bianca Bentes, Raimundo da Silva, Ivana Veneza, Iracilda Sampaio, Marcelo Vallinoto, Grazielle Evangelista Gomes

published 28 Sep 2023

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