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Sequence databases

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

published 14 Dec 2009

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The Heterogeneous Allelic Repertoire of Human Toll-Like Receptor (TLR) Genes

Philippe Georgel, Cécile Macquin, Seiamak Bahram

published 17 Nov 2009

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A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants

Alberto Riva, Graziano Pesole

published 28 Oct 2009

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Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

published 09 Oct 2009

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Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, Matthew Haynes, Robert Schmieder, Florent E. Angly, Joas Silva, Sassan Tammadoni, Bahador Nosrat, Douglas Conrad, Forest Rohwer

published 09 Oct 2009

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Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, Qiong Wang, Janne Nikkilä, Julian R. Marchesi, Hauke Smidt, Willem M. de Vos, R. Paul Ross, Paul W. O'Toole

published 20 Aug 2009

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A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

Linda A. Amaral-Zettler, Elizabeth A. McCliment, Hugh W. Ducklow, Susan M. Huse

published 27 Jul 2009

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3640 Unique EST Clusters from the Medaka Testis and Their Potential Use for Identifying Conserved Testicular Gene Expression in Fish and Mammals

Lijan Lo, Zhenhai Zhang, Ni Hong, Jinrong Peng, Yunhan Hong

published 23 Dec 2008

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FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

published 30 Oct 2008

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Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, Ying Huang, Rob Edwards, Weizhong Li, Paul Gilna, Ian Joint

published 22 Aug 2008

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Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

Ani Qu, Jennifer M. Brulc, Melissa K. Wilson, Bibiana F. Law, James R. Theoret, Lynn A. Joens, Michael E. Konkel, Florent Angly, Elizabeth A. Dinsdale, Robert A. Edwards, Karen E. Nelson, Bryan A. White

published 13 Aug 2008

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Targeted Development of Registries of Biological Parts

Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, Kristal L. Cooper, Oswald Crasta, Emily C. DeLalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, Sally A. Waldon

published 16 Jul 2008

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