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Sequence databases

An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

An Integrated Mass-Spectrometry Pipeline Identifies Novel Protein Coding-Regions in the Human Genome

Danny A. Bitton, Duncan L. Smith, [ ... ], Crispin J. Miller

A Statistical Method for the Detection of Alternative Splicing Using RNA-Seq

Liguo Wang, Yuanxin Xi, [ ... ], Wei Li

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

The Heterogeneous Allelic Repertoire of Human Toll-Like Receptor (TLR) Genes

Philippe Georgel, Cécile Macquin, Seiamak Bahram

A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants

Alberto Riva, Graziano Pesole

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, [ ... ], Paul W. O'Toole

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

Linda A. Amaral-Zettler, Elizabeth A. McCliment, Hugh W. Ducklow, Susan M. Huse

3640 Unique EST Clusters from the Medaka Testis and Their Potential Use for Identifying Conserved Testicular Gene Expression in Fish and Mammals

Lijan Lo, Zhenhai Zhang, [ ... ], Yunhan Hong

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

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