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Sequence databases

Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis

Yi-Cheng Chen, Kripamoy Aguan, Chu-Wen Yang, Yao-Tsung Wang, Nikhil R. Pal, I-Fang Chung

published 25 May 2011

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The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue

Richard A. Moore, René L. Warren, J. Douglas Freeman, Julia A. Gustavsen, Caroline Chénard, Jan M. Friedman, Curtis A. Suttle, Yongjun Zhao, Robert A. Holt

published 13 May 2011

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jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

Martin Jones, Anisah Ghoorah, Mark Blaxter

published 25 Apr 2011

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CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome

Ann L. Griffen, Clifford J. Beall, Noah D. Firestone, Erin L. Gross, James M. DiFranco, Jori H. Hardman, Bastienne Vriesendorp, Russell A. Faust, Daniel A. Janies, Eugene J. Leys

published 22 Apr 2011

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Comparison of Antibody Repertoires Produced by HIV-1 Infection, Other Chronic and Acute Infections, and Systemic Autoimmune Disease

Felix Breden, Christa Lepik, Nancy S. Longo, Marinieve Montero, Peter E. Lipsky, Jamie K. Scott

published 30 Mar 2011

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DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment

Li Lian Wong, Eric Peatman, Jianguo Lu, Huseyin Kucuktas, Shunping He, Chuanjiang Zhou, Uthairat Na-nakorn, Zhanjiang Liu

published 15 Mar 2011

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Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

published 09 Mar 2011

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Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

published 16 Feb 2011

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Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

published 28 Jan 2011

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Use of rbcL and trnL-F as a Two-Locus DNA Barcode for Identification of NW-European Ferns: An Ecological Perspective

G. Arjen de Groot, Heinjo J. During, Jan W. Maas, Harald Schneider, Johannes C. Vogel, Roy H. J. Erkens

published 26 Jan 2011

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Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma

Yoshiaki Mizuguchi, Takuya Mishima, Shigeki Yokomuro, Yasuo Arima, Yutaka Kawahigashi, Kengo Shigehara, Tomohiro Kanda, Hiroshi Yoshida, Eiji Uchida, Takashi Tajiri, Toshihiro Takizawa

published 25 Jan 2011

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Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes

Tulika Prakash, Vineet K. Sharma, Naoki Adati, Ritsuko Ozawa, Naveen Kumar, Yuichiro Nishida, Takayoshi Fujikake, Tadayuki Takeda, Todd D. Taylor

published 12 Oct 2010

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Identification of cis-Regulatory Elements in the Mammalian Genome: The cREMaG Database

Marcin Piechota, Michal Korostynski, Ryszard Przewlocki

published 31 Aug 2010

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