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Sequence databases

Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis

Yi-Cheng Chen, Kripamoy Aguan, [ ... ], I-Fang Chung

The Sensitivity of Massively Parallel Sequencing for Detecting Candidate Infectious Agents Associated with Human Tissue

Richard A. Moore, René L. Warren, [ ... ], Robert A. Holt

jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

Martin Jones, Anisah Ghoorah, Mark Blaxter

CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome

Ann L. Griffen, Clifford J. Beall, [ ... ], Eugene J. Leys

Comparison of Antibody Repertoires Produced by HIV-1 Infection, Other Chronic and Acute Infections, and Systemic Autoimmune Disease

Felix Breden, Christa Lepik, [ ... ], Jamie K. Scott

DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment

Li Lian Wong, Eric Peatman, [ ... ], Zhanjiang Liu

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments

Ben Temperton, Jack A. Gilbert, John P. Quinn, John W. McGrath

Use of rbcL and trnL-F as a Two-Locus DNA Barcode for Identification of NW-European Ferns: An Ecological Perspective

G. Arjen de Groot, Heinjo J. During, [ ... ], Roy H. J. Erkens

Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma

Yoshiaki Mizuguchi, Takuya Mishima, [ ... ], Toshihiro Takizawa

Expression of Conjoined Genes: Another Mechanism for Gene Regulation in Eukaryotes

Tulika Prakash, Vineet K. Sharma, [ ... ], Todd D. Taylor

Identification of cis-Regulatory Elements in the Mammalian Genome: The cREMaG Database

Marcin Piechota, Michal Korostynski, Ryszard Przewlocki

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