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Sequence databases

microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter Sequences

Jittima Piriyapongsa, Chaiwat Bootchai, Chumpol Ngamphiw, Sissades Tongsima

Molecular Phylogeny of the Cyrtophorid Ciliates (Protozoa, Ciliophora, Phyllopharyngea)

Shan Gao, Jie Huang, Jiamei Li, Weibo Song

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

Yemin Lan, Qiong Wang, James R. Cole, Gail L. Rosen

CRDB: Database of Chemosensory Receptor Gene Families in Vertebrate

Dong Dong, Ke Jin, Xiaoli Wu, Yang Zhong

PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena

Djamel Harbi, Marimuthu Parthiban, [ ... ], Paul M. Harrison

Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes

Eve Toulza, Alessandro Tagliabue, Stéphane Blain, Gwenael Piganeau

Comparative Metaproteomics and Diversity Analysis of Human Intestinal Microbiota Testifies for Its Temporal Stability and Expression of Core Functions

Carolin A. Kolmeder, Mark de Been, [ ... ], Willem M. de Vos

Microarray-Based Transcriptomic Analysis of Differences between Long-Term Gregarious and Solitarious Desert Locusts

Liesbeth Badisco, Swidbert R. Ott, [ ... ], Jozef Vanden Broeck

Strategies for Metagenomic-Guided Whole-Community Proteomics of Complex Microbial Environments

Brandi L. Cantarel, Alison R. Erickson, [ ... ], Robert L. Hettich

Characterizing the Escherichia coli O157:H7 Proteome Including Protein Associations with Higher Order Assemblies

Rembert Pieper, Quanshun Zhang, [ ... ], Saul Tzipori

Exploring the Diversity of Gardnerella vaginalis in the Genitourinary Tract Microbiota of Monogamous Couples Through Subtle Nucleotide Variation

A. Murat Eren, Marcela Zozaya, [ ... ], Michael J. Ferris

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

Tong Zhang, Xu-Xiang Zhang, Lin Ye

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

Jason S. Cumbie, Jeffrey A. Kimbrel, [ ... ], Jeff H. Chang

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