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Sequence databases

Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error

Teresita M. Porter, G. Brian Golding

published 27 Apr 2012

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MycoRRdb: A Database of Computationally Identified Regulatory Regions within Intergenic Sequences in Mycobacterial Genomes

Mohit Midha, Nirmal K. Prasad, Vaibhav Vindal

published 26 Apr 2012

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A Ranking System for Reference Libraries of DNA Barcodes: Application to Marine Fish Species from Portugal

Filipe O. Costa, Monica Landi, Rogelia Martins, Maria H. Costa, Maria E. Costa, Miguel Carneiro, Maria J. Alves, Dirk Steinke, Gary R. Carvalho

published 25 Apr 2012

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PCR Primers for Metazoan Mitochondrial 12S Ribosomal DNA Sequences

Ryuji J. Machida, Matthew Kweskin, Nancy Knowlton

published 19 Apr 2012

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Annotation of the Transcriptome from Taenia pisiformis and Its Comparative Analysis with Three Taeniidae Species

Deying Yang, Yan Fu, Xuhang Wu, Yue Xie, Huaming Nie, Lin Chen, Xiang Nong, Xiaobin Gu, Shuxian Wang, Xuerong Peng, Ning Yan, Runhui Zhang, Wanpeng Zheng, Guangyou Yang

published 13 Apr 2012

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Finding a Needle in the Virus Metagenome Haystack - Micro-Metagenome Analysis Captures a Snapshot of the Diversity of a Bacteriophage Armoire

Jessica Ray, Michael Dondrup, Sejal Modha, Ida Helene Steen, Ruth-Anne Sandaa, Martha Clokie

published 11 Apr 2012

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Fingerprinting the Asterid Species Using Subtracted Diversity Array Reveals Novel Species-Specific Sequences

Nitin Mantri, Alexandra Olarte, Chun Guang Li, Charlie Xue, Edwin C. K. Pang

published 09 Apr 2012

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microPIR: An Integrated Database of MicroRNA Target Sites within Human Promoter Sequences

Jittima Piriyapongsa, Chaiwat Bootchai, Chumpol Ngamphiw, Sissades Tongsima

published 16 Mar 2012

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Molecular Phylogeny of the Cyrtophorid Ciliates (Protozoa, Ciliophora, Phyllopharyngea)

Shan Gao, Jie Huang, Jiamei Li, Weibo Song

published 12 Mar 2012

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Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

Yemin Lan, Qiong Wang, James R. Cole, Gail L. Rosen

published 05 Mar 2012

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CRDB: Database of Chemosensory Receptor Gene Families in Vertebrate

Dong Dong, Ke Jin, Xiaoli Wu, Yang Zhong

published 29 Feb 2012

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PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena

Djamel Harbi, Marimuthu Parthiban, Deena M. A. Gendoo, Sepehr Ehsani, Manish Kumar, Gerold Schmitt-Ulms, Ramanathan Sowdhamini, Paul M. Harrison

published 20 Feb 2012

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Analysis of the Global Ocean Sampling (GOS) Project for Trends in Iron Uptake by Surface Ocean Microbes

Eve Toulza, Alessandro Tagliabue, Stéphane Blain, Gwenael Piganeau

published 17 Feb 2012

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