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Sequence databases

ClassyFlu: Classification of Influenza A Viruses with Discriminatively Trained Profile-HMMs

Sandra Van der Auwera, Ingo Bulla, [ ... ], Mario Stanke

Deep Sequencing-Based Analysis of the Cymbidium ensifolium Floral Transcriptome

Xiaobai Li, Jie Luo, [ ... ], Ming Xie

Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads

Laurent Gautier, Ole Lund

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

Martin Kemler, Jeff Garnas, [ ... ], Bernard Slippers

Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton’s Bat (Myotis daubentonii) in Southwestern Finland

Eero J. Vesterinen, Thomas Lilley, Veronika N. Laine, Niklas Wahlberg

Floral Transcriptome Sequencing for SSR Marker Development and Linkage Map Construction in the Tea Plant (Camellia sinensis)

Li-Qiang Tan, Li-Yuan Wang, [ ... ], Jin-Bo Liang

Discovery of Genes Related to Witches Broom Disease in Paulownia tomentosa × Paulownia fortunei by a De Novo Assembled Transcriptome

Rongning Liu, Yanpeng Dong, [ ... ], Suyan Niu

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

Penelope K. Lindeque, Helen E. Parry, [ ... ], Angus Atkinson

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

Akifumi S. Tanabe, Hirokazu Toju

Sequencing and De Novo Analysis of the Hemocytes Transcriptome in Litopenaeus vannamei Response to White Spot Syndrome Virus Infection

Shuxia Xue, Yichen Liu, [ ... ], Jinsheng Sun

Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

Characterization of Liaoning Cashmere Goat Transcriptome: Sequencing, De Novo Assembly, Functional Annotation and Comparative Analysis

Hongliang Liu, Tingting Wang, [ ... ], Yong Zhang

Transcriptome Sequencing and Expression Analysis of Terpenoid Biosynthesis Genes in Litsea cubeba

Xiao-Jiao Han, Yang-Dong Wang, [ ... ], Qing-Ke Wu

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