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Sequence databases

Taxonomic Reference Libraries for Environmental Barcoding: A Best Practice Example from Diatom Research

Jonas Zimmermann, Nelida Abarca, Neela Enk, Oliver Skibbe, Wolf-Henning Kusber, Regine Jahn

published 29 Sep 2014

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SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

published 26 Sep 2014

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STATdb: A Specialised Resource for the STATome

C. Pawan K. Patro, Asif M. Khan, Tin Wee Tan, Xin-Yuan Fu

published 26 Aug 2014

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GHOSTX: An Improved Sequence Homology Search Algorithm Using a Query Suffix Array and a Database Suffix Array

Shuji Suzuki, Masanori Kakuta, Takashi Ishida, Yutaka Akiyama

published 06 Aug 2014

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MediaDB: A Database of Microbial Growth Conditions in Defined Media

Matthew A. Richards, Victor Cassen, Benjamin D. Heavner, Nassim E. Ajami, Andrea Herrmann, Evangelos Simeonidis, Nathan D. Price

published 06 Aug 2014

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A Phylogenetic Re-Analysis of Groupers with Applications for Ciguatera Fish Poisoning

Charlotte Schoelinck, Damien D. Hinsinger, Agnès Dettaï, Corinne Cruaud, Jean-Lou Justine

published 05 Aug 2014

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Proteomic Analysis of Chinook Salmon (Oncorhynchus tshawytscha) Ovarian Fluid

Sheri L. Johnson, Marsha Villarroel, Patrice Rosengrave, Alan Carne, Torsten Kleffmann, P. Mark Lokman, Neil J. Gemmell

published 04 Aug 2014

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De Novo Transcriptomes of Olfactory Epithelium Reveal the Genes and Pathways for Spawning Migration in Japanese Grenadier Anchovy (Coilia nasus)

Guoli Zhu, Liangjiang Wang, Wenqiao Tang, Dong Liu, Jinquan Yang

published 01 Aug 2014

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GMEnzy: A Genetically Modified Enzybiotic Database

Hongyu Wu, Jinjiang Huang, Hairong Lu, Guodong Li, Qingshan Huang

published 01 Aug 2014

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Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

Marcela Uliano-Silva, Juliana Alves Americo, Rodrigo Brindeiro, Francesco Dondero, Francisco Prosdocimi, Mauro de Freitas Rebelo

published 21 Jul 2014

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Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

Richard A. Hurt Jr, Michael S. Robeson II, Migun Shakya, James G. Moberly, Tatiana A. Vishnivetskaya, Baohua Gu, Dwayne A. Elias

published 17 Jul 2014

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Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)

Cody E. Hinchliff, Stephen Andrew Smith

published 07 Jul 2014

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Single-Nucleotide Mutation Matrix: A New Model for Predicting the NF-κB DNA Binding Sites

Wenxin Du, Jing Gao, Tingting Wang, Jinke Wang

published 03 Jul 2014

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