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Sequence databases

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, [ ... ], Paul W. O'Toole

Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters

Sachiko Miyake, Sangwan Kim, [ ... ], Takashi Yamamura

Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective

R. Henrik Nilsson, Martin Ryberg, [ ... ], Urmas Kõljalg

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, [ ... ], Ian Joint

miRWalk: An online resource for prediction of microRNA binding sites

Carsten Sticht, Carolina De La Torre, Alisha Parveen, Norbert Gretz

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Fernando Dini Andreote, Diego Javier Jiménez, [ ... ], Itamar Soares de Melo

Utility of the trnH–psbA Intergenic Spacer Region and Its Combinations as Plant DNA Barcodes: A Meta-Analysis

Xiaohui Pang, Chang Liu, [ ... ], Shilin Chen

PCR Primers for Metazoan Nuclear 18S and 28S Ribosomal DNA Sequences

Ryuji J. Machida, Nancy Knowlton

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

Tong Zhang, Xu-Xiang Zhang, Lin Ye

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

Nils Johan Fredriksson, Malte Hermansson, Britt-Marie Wilén

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