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Sequence databases

Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site

Rebecca A. Reiss, Peter A. Guerra, Oleg Makhnin, Matthew Kellom

published 14 Feb 2025

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Identification of Cocconeis neothumensis var. marina using a polyphasic approach including ultrastructure and gene annotation

Emanuele Somma, Maria Costantini, Chiara Pennesi, Nadia Ruocco, Olga De Castro, Antonio Terlizzi, Valerio Zupo

published 13 Feb 2025

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Using DNA metabarcoding and direct behavioural observations to identify the diet of proboscis monkeys (Nasalis larvatus) in the Kinabatangan Floodplain, Sabah

Valentine Thiry, Arthur F. Boom, Danica J. Stark, Olivier J. Hardy, Roseline C. Beudels-Jamar, Regine Vercauteren Drubbel, Sylvia Alsisto, Martine Vercauteren, Benoit Goossens

published 03 Jan 2025

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Integrative use of DNA barcode and morphology reveal high level of diversity in the ornamental fish on the lower Amazon basin

Elciane Araújo de Freitas, Dayana Batista dos Santos, Charles Samuel Moraes Ferreira, Cárlison Silva-Oliveira, Grazielle Fernanda Evangelista-Gomes, Ivana Barbosa Veneza

published 30 Dec 2024

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MetaCONNET: A metagenomic polishing tool for long-read assemblies

Bingru Sun, Jian Guo, Hao Jin, Zijie Jin, Yaping Sun, Yuanchen Mao, Fuli Xie, Yun He, Zhihong Sun, Wei Li, Igor Ivanov, Hui Tian

published 03 Dec 2024

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Reference Sequence Browser: An R application with a user-friendly GUI to rapidly query sequence databases

Sriram Ramesh, Samuel Rapp, Jorge Tapias Gomez, Benjamin Levine, Daniel Tapias-Gomez, Dickson Chung, Zia Truong

published 31 Oct 2024

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Environmental DNA as a complementary tool for biodiversity monitoring: A multi-technique and multi-trophic approach to investigate cetacean distribution and feeding ecology

Luís Afonso, Joana Costa, Ana Mafalda Correia, Raul Valente, Eva Lopes, Maria Paola Tomasino, Ágatha Gil, Cláudia Oliveira-Rodrigues, Isabel Sousa Pino, Alfredo López, Paula Suarez-Bregua, Catarina Magalhães

published 16 Oct 2024

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Field and DNA-barcode based surveys reveal evidence of rare endemic fishes in the Rufiji River Basin

Jackson L. Saiperaki, Silvia F. Materu, Prisila A. Mkenda, Elly J. Ligate, Cyrus Rumisha

published 19 Sep 2024

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Comparative genomics of Tn6411 transposons carrying the bla_IMP-1 gene in Pseudomonas aeruginosa

Lin Zheng, Zixian Wang, Jingyi Guo, Jiayao Guan, Gejin Lu, Jie Jing, Shiwen Sun, Yang Sun, Xue Ji, Bowen Jiang, Yongjie Wang, Chuanfang Zhao, Lingwei Zhu, Xuejun Guo

published 09 Jul 2024

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A reliable and quick method for screening alternative splicing variants for low-abundance genes

Yanchun Zhang, Wubin Qu, Ruifen Yan, Huqi Liu, Chenggang Zhang, Zhihui Li, Guofu Dong

published 27 Jun 2024

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Bioinformatics for Dentistry: A secondary database for the genetics of tooth development

Ava K. Chow, Rachel Low, Jerald Yuan, Karen K. Yee, Jaskaranjit Kaur Dhaliwal, Shanice Govia, Nazlee Sharmin

published 06 Jun 2024

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Identifying widespread and recurrent variants of genetic parts to improve annotation of engineered DNA sequences

Matthew J. McGuffie, Jeffrey E. Barrick

published 28 May 2024

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A unified classification system for HIV-1 5’ long terminal repeats

Xing Guo, Dan Yu, Mengying Liu, Hanping Li, Mingyue Chen, Xinyu Wang, Xiuli Zhai, Bohan Zhang, Yanglan Wang, Caiqing Yang, Chunlei Wang, Yongjian Liu, Jingwan Han, Xiaolin Wang, Jingyun Li, Lei Jia, Lin Li

published 02 May 2024

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