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Sequence databases

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén

published 03 May 2017

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Database for the ampC alleles in Acinetobacter baumannii

Nabil Karah, Keith A. Jolley, Ruth M. Hall, Bernt Eric Uhlin

published 01 May 2017

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Unidentifiable by morphology: DNA barcoding of plant material in local markets in Iran

Abdolbaset Ghorbani, Yousef Saeedi, Hugo J. de Boer

published 18 Apr 2017

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DNApod: DNA polymorphism annotation database from next-generation sequence read archives

Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Tazro Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura

published 24 Feb 2017

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De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae)

Xinle Duan, Kang Wang, Sha Su, Ruizheng Tian, Yuting Li, Maohua Chen

published 17 Feb 2017

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KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)

Gabriele Sales, Bruce E. Deagle, Enrica Calura, Paolo Martini, Alberto Biscontin, Cristiano De Pittà, So Kawaguchi, Chiara Romualdi, Bettina Meyer, Rodolfo Costa, Simon Jarman

published 10 Feb 2017

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Novel Primer Sets for Next Generation Sequencing-Based Analyses of Water Quality

Elvina Lee, Maninder S. Khurana, Andrew S. Whiteley, Paul T. Monis, Andrew Bath, Cameron Gordon, Una M. Ryan, Andrea Paparini

published 24 Jan 2017

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DNA Metabarcoding of Amazonian Ichthyoplankton Swarms

M. E. Maggia, Y. Vigouroux, J. F. Renno, F. Duponchelle, E. Desmarais, J. Nunez, C. García-Dávila, F. M. Carvajal-Vallejos, E. Paradis, J. F. Martin, C. Mariac

published 17 Jan 2017

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Development of a Feature and Template-Assisted Assembler and Application to the Analysis of a Foot-and-Mouth Disease Virus Genotyping Microarray

Roger W. Barrette, Jessica M. Rowland, Frederic R. Grau, Michael T. McIntosh

published 03 Jan 2017

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An Alignment-Free Algorithm in Comparing the Similarity of Protein Sequences Based on Pseudo-Markov Transition Probabilities among Amino Acids

Yushuang Li, Tian Song, Jiasheng Yang, Yi Zhang, Jialiang Yang

published 05 Dec 2016

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Morphology and Species Composition of Southern Adriatic Sea Leptocephali Evaluated Using DNA Barcoding

Alessandra Anibaldi, Claudia Benassi Franciosi, Francesco Massari, Fausto Tinti, Corrado Piccinetti, Giulia Riccioni

published 28 Nov 2016

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Accelerating Information Retrieval from Profile Hidden Markov Model Databases

Ahmad Tamimi, Yaqoub Ashhab, Hashem Tamimi

published 22 Nov 2016

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Metabarcoding of Fecal Samples to Determine Herbivore Diets: A Case Study of the Endangered Pacific Pocket Mouse

Deborah D. Iwanowicz, Amy G. Vandergast, Robert S. Cornman, Cynthia R. Adams, Joshua R. Kohn, Robert N. Fisher, Cheryl S. Brehme

published 16 Nov 2016

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