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Sequence databases

Instances of erroneous DNA barcoding of metazoan invertebrates: Are universal cox1 gene primers too “universal”?

Monika Mioduchowska, Michał Jan Czyż, Bartłomiej Gołdyn, Jarosław Kur, Jerzy Sell

published 22 Jun 2018

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Codon usage bias reveals genomic adaptations to environmental conditions in an acidophilic consortium

Andrew Hart, María Paz Cortés, Mauricio Latorre, Servet Martinez

published 09 May 2018

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MpBsmi: A new algorithm for the recognition of continuous biological sequence pattern based on index structure

Weina Li, Jiadong Ren

published 23 Apr 2018

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Vertically distinct microbial communities in the Mariana and Kermadec trenches

Logan M. Peoples, Sierra Donaldson, Oladayo Osuntokun, Qing Xia, Alex Nelson, Jessica Blanton, Eric E. Allen, Matthew J. Church, Douglas H. Bartlett

published 05 Apr 2018

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Distribution of triclosan-resistant genes in major pathogenic microorganisms revealed by metagenome and genome-wide analysis

Raees Khan, Nazish Roy, Kihyuck Choi, Seon-Woo Lee

published 08 Feb 2018

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A high HIV-1 strain variability in London, UK, revealed by full-genome analysis: Results from the ICONIC project

Gonzalo Yebra, Dan Frampton, Tiziano Gallo Cassarino, Jade Raffle, Jonathan Hubb, R. Bridget Ferns, Laura Waters, C. Y. William Tong, Zisis Kozlakidis, Andrew Hayward, Paul Kellam, Deenan Pillay, Duncan Clark, Eleni Nastouli, Andrew J. Leigh Brown, on behalf of the ICONIC Consortium

published 01 Feb 2018

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Extension of the viral ecology in humans using viral profile hidden Markov models

Zurab Bzhalava, Emilie Hultin, Joakim Dillner

published 19 Jan 2018

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Who’s there? – First morphological and DNA barcoding catalogue of the shallow Hawai’ian sponge fauna

Laura Núñez Pons, Barbara Calcinai, Ruth D. Gates

published 21 Dec 2017

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Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae

Florian Mauffrey, Éric Fournier, Walter Demczuk, Irene Martin, Michael Mulvey, Christine Martineau, Simon Lévesque, Sadjia Bekal, Marc-Christian Domingo, Florence Doualla-Bell, Jean Longtin, Brigitte Lefebvre

published 13 Dec 2017

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Pea Marker Database (PMD) – A new online database combining known pea (Pisum sativum L.) gene-based markers

Olga A. Kulaeva, Aleksandr I. Zhernakov, Alexey M. Afonin, Sergei S. Boikov, Anton S. Sulima, Igor A. Tikhonovich, Vladimir A. Zhukov

published 26 Oct 2017

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De novo RNA sequencing transcriptome of Rhododendron obtusum identified the early heat response genes involved in the transcriptional regulation of photosynthesis

Linchuan Fang, Jun Tong, Yanfang Dong, Dongyun Xu, Jing Mao, Yuan Zhou

published 23 Oct 2017

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De novo assembly and analysis of the transcriptome of Rumex patientia L. during cold stress

Jianxin Liu, Yongqing Xu, Liguo Zhang, Wei Li, Zhenxue Cai, Fei Li, Mu Peng, Fenglan Li, Baozhong Hu

published 12 Oct 2017

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PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology

Aris Gioutlakis, Maria I. Klapa, Nicholas K. Moschonas

published 12 Oct 2017

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