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Sequence alignment

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

Stephen J. Salipante, Dhruba J. Sengupta, [ ... ], Noah G. Hoffman

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, [ ... ], Stephen R. Quake

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives

Julie D. Thompson, Benjamin Linard, Odile Lecompte, Olivier Poch

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

Different Binding Properties and Function of CXXC Zinc Finger Domains in Dnmt1 and Tet1

Carina Frauer, Andrea Rottach, [ ... ], Heinrich Leonhardt

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

Multiple Multilocus DNA Barcodes from the Plastid Genome Discriminate Plant Species Equally Well

Aron J. Fazekas, Kevin S. Burgess, [ ... ], Spencer C. H. Barrett

Evolutionary History of Assassin Bugs (Insecta: Hemiptera: Reduviidae): Insights from Divergence Dating and Ancestral State Reconstruction

Wei Song Hwang, Christiane Weirauch

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

Martin Laurence, Christos Hatzis, Douglas E. Brash

Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

Emma M. Quinn, Paul Cormican, [ ... ], Derek W. Morris

Unlocking Short Read Sequencing for Metagenomics

Sébastien Rodrigue, Arne C. Materna, [ ... ], Sallie W. Chisholm

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonas Binladen, M. Thomas P. Gilbert, [ ... ], Eske Willerslev

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

Rym Fekih, Hiroki Takagi, [ ... ], Ryohei Terauchi

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