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Sequence alignment

Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference

Frixos Papadopoulos, Tilman Sanchez-Elsner, Mahesan Niranjan, Ashley I. Heinson

published 06 Aug 2025

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Apparent differences between human and chimp proteomes are reduced when considering human population: Human specific variants are enriched in disordered and compositionally biased regions

Pablo Mier, Miguel A. Andrade-Navarro, Enrique Morett

published 31 Jul 2025

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A long-term localization and mapping system for autonomous inspection robots in large-scale environments using 3D LiDAR sensors

Wandeng Mao, Liang Jiang, Shanfeng Liu, Shengzhe Xi, Hua Bao

published 31 Jul 2025

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Multi-modal deep learning for intelligent landscape design generation: A novel CBS3-LandGen model

Mingzhen Lu, Lili Shi

published 24 Jul 2025

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cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Alexander J. Petri, Mai Thi-Huyen Nguyen, Anjali Rajwar, Erik Benson, Kristoffer Sahlin

published 24 Jul 2025

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Bioinformatics and modelling studies of FhuD, the periplasmic siderophore binding protein from the plant pathogen Erwinia amylovora

Sharda Bharti, Lavinia Carlini, Alfonso Esposito, Stefano Benini

published 23 Jul 2025

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Off-target sequence variations driven by the intrinsic properties of the Cas–sgRNA–DNA complex in genome editing

Celine Kurniawan, Takeshi Itoh

published 18 Jul 2025

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A high quality genome of the common swamp pitcher plant (Nepenthes mirabilis) using PacBio HiFi sequencing

Christopher J. Jackson, Todd G.B. McLay, Gareth D. Holmes, Theodore R. Allnutt, Alastair S. Robinson

published 10 Jul 2025

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A syllable-character collaborative model for enhanced Pinyin and Chinese recognition

Zeyuan Chen, Cheng Zhong, Danyang Chen

published 07 Jul 2025

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Tracing the function expansion for a primordial protein fold in the era of fold-based function prediction: β-trefoil

Moushmi Goswami, Subhashini Srinivasan

published 03 Jul 2025

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Loss of a major venom toxin gene in a Western Diamondback rattlesnake population

Noah L. Dowell, Elizabeth Cahill, Sean B. Carroll

published 03 Jul 2025

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Few-shot network intrusion detection method based on multi-domain fusion and cross-attention

Congyuan Xu, Donghui Li, Zihao Liu, Jun Yang, Qinfeng Shen, Ningbing Tong

published 02 Jul 2025

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Soft label collaborative view consistency enhancement with application to incomplete multi-view clustering

Jie Zhang, Jiali Tang

published 01 Jul 2025

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