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Sequence alignment

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Marjolein J. Poen, Anne Pohlmann, [ ... ], Richard J. Ellis

Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump

Kamil Górecki, Megan M. McEvoy

Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureus

Geoffrey W. Coombs, Sarah L. Baines, [ ... ], Frances G. O’Brien

The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Sophie Röhling, Alexander Linne, [ ... ], Burkhard Morgenstern

Informatics investigations into anti-thyroid drug induced agranulocytosis associated with multiple HLA-B alleles

Kerry A. Ramsbottom, Daniel F. Carr, Daniel J. Rigden, Andrew R. Jones

Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades

Ignacio Rafael Chiumiento, Santiago Ituarte, [ ... ], Marcos Sebastián Dreon

Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae)

Eric de Camargo Smidt, Michelle Zavala Páez, [ ... ], Mark W. Chase

Recombination and gene loss occur simultaneously during bacterial horizontal gene transfer

Bert Ely

Phylogenetic relationships of Atractylodes lancea, A. chinensis and A. macrocephala, revealed by complete plastome and nuclear gene sequences

Liqiang Wang, Hui Zhang, [ ... ], Chang Liu

A graph-based algorithm for RNA-seq data normalization

Diem-Trang Tran, Aditya Bhaskara, Balagurunathan Kuberan, Matthew Might

Disease-relevant mutations alter amino acid co-evolution networks in the second nucleotide binding domain of CFTR

Gabrianne Ivey, Robert T. Youker

RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

Analysis of the Rdr1 gene family in different Rosaceae genomes reveals an origin of an R-gene cluster after the split of Rubeae within the Rosoideae subfamily

Ina Menz, Deepika Lakhwani, [ ... ], Thomas Debener

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