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Sequence alignment

Use of Low-Coverage, Large-Insert, Short-Read Data for Rapid and Accurate Generation of Enhanced-Quality Draft Pseudomonas Genome Sequences

Heath E. O'Brien, Yunchen Gong, Pauline Fung, Pauline W. Wang, David S. Guttman

published 02 Nov 2011

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NNAlign: A Web-Based Prediction Method Allowing Non-Expert End-User Discovery of Sequence Motifs in Quantitative Peptide Data

Massimo Andreatta, Claus Schafer-Nielsen, Ole Lund, Søren Buus, Morten Nielsen

published 02 Nov 2011

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A Molecular Phylogeny of Bivalve Mollusks: Ancient Radiations and Divergences as Revealed by Mitochondrial Genes

Federico Plazzi, Alessandro Ceregato, Marco Taviani, Marco Passamonti

published 01 Nov 2011

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Protein Domain of Unknown Function 3233 is a Translocation Domain of Autotransporter Secretory Mechanism in Gamma proteobacteria

Ananth Prakash, S. Yogeeshwari, Sanchari Sircar, Shipra Agrawal

published 01 Nov 2011

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A Photolyase-Like Protein from Agrobacterium tumefaciens with an Iron-Sulfur Cluster

Inga Oberpichler, Antonio J. Pierik, Janine Wesslowski, Richard Pokorny, Ran Rosen, Michal Vugman, Fan Zhang, Olivia Neubauer, Eliora Z. Ron, Alfred Batschauer, Tilman Lamparter

published 31 Oct 2011

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TCRep 3D: An Automated In Silico Approach to Study the Structural Properties of TCR Repertoires

Antoine Leimgruber, Mathias Ferber, Melita Irving, Hamid Hussain-Kahn, Sébastien Wieckowski, Laurent Derré, Nathalie Rufer, Vincent Zoete, Olivier Michielin

published 28 Oct 2011

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Evidence for Retrogene Origins of the Prion Gene Family

Sepehr Ehsani, Renzhu Tao, Cosmin L. Pocanschi, Hezhen Ren, Paul M. Harrison, Gerold Schmitt-Ulms

published 27 Oct 2011

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Sialome of a Generalist Lepidopteran Herbivore: Identification of Transcripts and Proteins from Helicoverpa armigera Labial Salivary Glands

Maria de la Paz Celorio-Mancera, Juliette Courtiade, Alexander Muck, David G. Heckel, Richard O. Musser, Heiko Vogel

published 27 Oct 2011

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Species-Specific Codon Context Rules Unveil Non-Neutrality Effects of Synonymous Mutations

Gabriela R. Moura, Miguel Pinheiro, Adelaide Freitas, José L. Oliveira, Jörg C. Frommlet, Laura Carreto, Ana R. Soares, Ana R. Bezerra, Manuel A. S. Santos

published 26 Oct 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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MysiRNA-Designer: A Workflow for Efficient siRNA Design

Mohamed Mysara, Jonathan M. Garibaldi, Mahmoud ElHefnawi

published 26 Oct 2011

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ReCombine: A Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-Genome Datasets

Carol M. Anderson, Stacy Y. Chen, Michelle T. Dimon, Ashwini Oke, Joseph L. DeRisi, Jennifer C. Fung

published 25 Oct 2011

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A Method for Metagenomics of Helicobacter pylori from Archived Formalin-Fixed Gastric Biopsies Permitting Longitudinal Studies of Carcinogenic Risk

Zongli Zheng, Anders F. Andersson, Weimin Ye, Olof Nyrén, Staffan Normark, Lars Engstrand

published 21 Oct 2011

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