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Sequence alignment

Structural Constraints on the Covariance Matrix Derived from Multiple Aligned Protein Sequences

William R. Taylor, Michael I. Sadowski

published 05 Dec 2011

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Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, Cheng-Hua Wang, Si-Yu Long, Ri-Bo Huang

published 05 Dec 2011

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Phasevarion Mediated Epigenetic Gene Regulation in Helicobacter pylori

Yogitha N. Srikhanta, Rebecca J. Gorrell, Jason A. Steen, Jayde A. Gawthorne, Terry Kwok, Sean M. Grimmond, Roy M. Robins-Browne, Michael P. Jennings

published 05 Dec 2011

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Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files

Muhammad Nazmus Sakib, Jijun Tang, W. Jim Zheng, Chin-Tser Huang

published 02 Dec 2011

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A Genomic Approach to Examine the Complex Evolution of Laurasiatherian Mammals

Björn M. Hallström, Adrian Schneider, Stefan Zoller, Axel Janke

published 02 Dec 2011

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Phylogeography of Ostreopsis along West Pacific Coast, with Special Reference to a Novel Clade from Japan

Shinya Sato, Tomohiro Nishimura, Keita Uehara, Hiroshi Sakanari, Wittaya Tawong, Naohito Hariganeya, Kirsty Smith, Lesley Rhodes, Takeshi Yasumoto, Yosuke Taira, Shoichiro Suda, Haruo Yamaguchi, Masao Adachi

published 02 Dec 2011

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Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, Jia-Ming Chang, Ting-Yi Sung, Wen-Lian Hsu

published 02 Dec 2011

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Systematic Comparison of Three Methods for Fragmentation of Long-Range PCR Products for Next Generation Sequencing

Ellen Knierim, Barbara Lucke, Jana Marie Schwarz, Markus Schuelke, Dominik Seelow

published 30 Nov 2011

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On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

published 30 Nov 2011

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Evolutionary Relationships of Microbial Aromatic Prenyltransferases

Tobias Bonitz, Vikram Alva, Orwah Saleh, Andrei N. Lupas, Lutz Heide

published 30 Nov 2011

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Interkingdom Gene Transfer of a Hybrid NPS/PKS from Bacteria to Filamentous Ascomycota

Daniel P. Lawrence, Scott Kroken, Barry M. Pryor, A. Elizabeth Arnold

published 29 Nov 2011

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A Conformational Switch in the Active Site of BT_2972, a Methyltransferase from an Antibiotic Resistant Pathogen B. thetaiotaomicron

Veerendra Kumar, J. Sivaraman

published 28 Nov 2011

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The Putative Endoglucanase PcGH61D from Phanerochaete chrysosporium Is a Metal-Dependent Oxidative Enzyme that Cleaves Cellulose

Bjørge Westereng, Takuya Ishida, Gustav Vaaje-Kolstad, Miao Wu, Vincent G. H. Eijsink, Kiyohiko Igarashi, Masahiro Samejima, Jerry Ståhlberg, Svein J. Horn, Mats Sandgren

published 23 Nov 2011

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