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RNA structure prediction

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

A Template-Dependent Dislocation Mechanism Potentiates K65R Reverse Transcriptase Mutation Development in Subtype C Variants of HIV-1

Dimitrios Coutsinos, Cédric F. Invernizzi, [ ... ], Mark A. Wainberg

Conformational Features of Topologically Classified RNA Secondary Structures

Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen

Extracting information from RNA SHAPE data: Kalman filtering approach

Sana Vaziri, Patrice Koehl, Sharon Aviran

Coarse-Grained Prediction of RNA Loop Structures

Liang Liu, Shi-Jie Chen

An apta-aggregation based machine learning assay for rapid quantification of lysozyme through texture parameters

Manoharan Sanjay, Kumar Gaurav, [ ... ], Eduardo Cortón

Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data

Soheila Montaseri, Mohammad Ganjtabesh, Fatemeh Zare-Mirakabad

RNAthor – fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis

Julita Gumna, Tomasz Zok, [ ... ], Marta Szachniuk

Ultra-Deep Pyrosequencing of Partial Surface Protein Genes from Infectious Salmon Anaemia Virus (ISAV) Suggest Novel Mechanisms Involved in Transition to Virulence

Turhan Markussen, Hilde Sindre, [ ... ], Knut Falk

The assessment of molecular dynamics results of three-dimensional RNA aptamer structure prediction

Bejo Ropii, Maulidwina Bethasari, [ ... ], Reza Aditama

De novo prediction of RNA 3D structures with deep generative models

Julius Ramakers, Christopher Frederik Blum, [ ... ], Markus Kollmann

VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability

Xiaojun Xu, Shi-Jie Chen

RNA secondary structure and nucleotide composition of the conserved hallmark sequence of Leishmania SIDER2 retroposons are essential for endonucleolytic cleavage and mRNA degradation

Hiva Azizi, Tatiany P. Romão, [ ... ], Barbara Papadopoulou

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