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RNA structure prediction

JNSViewer—A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

Jieming Shi, Xi Li, Min Dong, Mitchell Graham, Nehul Yadav, Chun Liang

published 05 Jun 2017

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Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data

Soheila Montaseri, Mohammad Ganjtabesh, Fatemeh Zare-Mirakabad

published 28 Nov 2016

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Accurate Classification of RNA Structures Using Topological Fingerprints

Jiajie Huang, Kejie Li, Michael Gribskov

published 18 Oct 2016

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VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability

Xiaojun Xu, Shi-Jie Chen

published 22 Sep 2016

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RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, Christian Höner zu Siederdissen, Christian Anthon, Ivo L. Hofacker, Henrik Nielsen, Jan Gorodkin

published 28 Oct 2015

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GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

Mélanie Boudard, Julie Bernauer, Dominique Barth, Johanne Cohen, Alain Denise

published 27 Aug 2015

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Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction

Xiaojun Xu, Peinan Zhao, Shi-Jie Chen

published 12 Sep 2014

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Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells

Yuki Furuse, Ryan Finethy, Hector A. Saka, Ana M. Xet-Mull, Dana M. Sisk, Kristen L. Jurcic Smith, Sunhee Lee, Jörn Coers, Raphael H. Valdivia, David M. Tobin, Bryan R. Cullen

published 03 Sep 2014

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Comprehensive Secondary Structure Elucidation of Four Genera of the Family Pospiviroidae

Tamara Giguère, Charith Raj Adkar-Purushothama, Jean-Pierre Perreault

published 04 Jun 2014

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RNAdigest: A Web-Based Tool for the Analysis and Prediction of Structure - Specific RNAse Digestion Results

Piotr Madanecki, Susan Nozell, Renata Ochocka, James F. Collawn, Rafal Bartoszewski

published 06 May 2014

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Ultra-Deep Pyrosequencing of Partial Surface Protein Genes from Infectious Salmon Anaemia Virus (ISAV) Suggest Novel Mechanisms Involved in Transition to Virulence

Turhan Markussen, Hilde Sindre, Christine Monceyron Jonassen, Torstein Tengs, Anja B. Kristoffersen, Jon Ramsell, Sanela Numanovic, Monika J. Hjortaas, Debes H. Christiansen, Ole Bendik Dale, Knut Falk

published 26 Nov 2013

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Modeling the Structure of RNA Molecules with Small-Angle X-Ray Scattering Data

Michal Jan Gajda, Denise Martinez Zapien, Emiko Uchikawa, Anne-Catherine Dock-Bregeon

published 04 Nov 2013

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Predicting Helical Topologies in RNA Junctions as Tree Graphs

Christian Laing, Segun Jung, Namhee Kim, Shereef Elmetwaly, Mai Zahran, Tamar Schlick

published 26 Aug 2013

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