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RNA structure prediction

JNSViewer—A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

Jieming Shi, Xi Li, [ ... ], Chun Liang

Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data

Soheila Montaseri, Mohammad Ganjtabesh, Fatemeh Zare-Mirakabad

Accurate Classification of RNA Structures Using Topological Fingerprints

Jiajie Huang, Kejie Li, Michael Gribskov

VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability

Xiaojun Xu, Shi-Jie Chen

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

Mélanie Boudard, Julie Bernauer, [ ... ], Alain Denise

Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction

Xiaojun Xu, Peinan Zhao, Shi-Jie Chen

Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells

Yuki Furuse, Ryan Finethy, [ ... ], Bryan R. Cullen

Comprehensive Secondary Structure Elucidation of Four Genera of the Family Pospiviroidae

Tamara Giguère, Charith Raj Adkar-Purushothama, Jean-Pierre Perreault

RNAdigest: A Web-Based Tool for the Analysis and Prediction of Structure - Specific RNAse Digestion Results

Piotr Madanecki, Susan Nozell, [ ... ], Rafal Bartoszewski

Ultra-Deep Pyrosequencing of Partial Surface Protein Genes from Infectious Salmon Anaemia Virus (ISAV) Suggest Novel Mechanisms Involved in Transition to Virulence

Turhan Markussen, Hilde Sindre, [ ... ], Knut Falk

Modeling the Structure of RNA Molecules with Small-Angle X-Ray Scattering Data

Michal Jan Gajda, Denise Martinez Zapien, Emiko Uchikawa, Anne-Catherine Dock-Bregeon

Predicting Helical Topologies in RNA Junctions as Tree Graphs

Christian Laing, Segun Jung, [ ... ], Tamar Schlick

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