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RNA structure prediction

Search for MicroRNAs Expressed by Intracellular Bacterial Pathogens in Infected Mammalian Cells

Yuki Furuse, Ryan Finethy, [ ... ], Bryan R. Cullen

Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction

Xiaojun Xu, Peinan Zhao, Shi-Jie Chen

Integrating Chemical Footprinting Data into RNA Secondary Structure Prediction

Kourosh Zarringhalam, Michelle M. Meyer, [ ... ], Peter Clote

In Vitro Secondary Structure of the Genomic RNA of Satellite Tobacco Mosaic Virus

Shreyas S. Athavale, J. Jared Gossett, [ ... ], Stephen C. Harvey

Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

JNSViewer—A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

Jieming Shi, Xi Li, [ ... ], Chun Liang

Predicting Helical Topologies in RNA Junctions as Tree Graphs

Christian Laing, Segun Jung, [ ... ], Tamar Schlick

RNAdigest: A Web-Based Tool for the Analysis and Prediction of Structure - Specific RNAse Digestion Results

Piotr Madanecki, Susan Nozell, [ ... ], Rafal Bartoszewski

Comprehensive Secondary Structure Elucidation of Four Genera of the Family Pospiviroidae

Tamara Giguère, Charith Raj Adkar-Purushothama, Jean-Pierre Perreault

Modeling the Structure of RNA Molecules with Small-Angle X-Ray Scattering Data

Michal Jan Gajda, Denise Martinez Zapien, Emiko Uchikawa, Anne-Catherine Dock-Bregeon

Accurate Classification of RNA Structures Using Topological Fingerprints

Jiajie Huang, Kejie Li, Michael Gribskov

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari, Ian Wark, Carlo Montemagno

GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

Mélanie Boudard, Julie Bernauer, [ ... ], Alain Denise

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