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RNA structure

SARS-CoV-2: Possible recombination and emergence of potentially more virulent strains

Dania Haddad, Sumi Elsa John, Anwar Mohammad, Maha M. Hammad, Prashantha Hebbar, Arshad Channanath, Rasheeba Nizam, Sarah Al-Qabandi, Ashraf Al Madhoun, Abdullah Alshukry, Hamad Ali, Thangavel Alphonse Thanaraj, Fahd Al-Mulla

published 25 May 2021

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High-throughput screening of the ReFRAME, Pandemic Box, and COVID Box drug repurposing libraries against SARS-CoV-2 nsp15 endoribonuclease to identify small-molecule inhibitors of viral activity

Ryan Choi, Mowei Zhou, Roger Shek, Jesse W. Wilson, Logan Tillery, Justin K. Craig, Indraneel A. Salukhe, Sarah E. Hickson, Neeraj Kumar, Rhema M. James, Garry W. Buchko, Ruilian Wu, Sydney Huff, Tu-Trinh Nguyen, Brett L. Hurst, Sara Cherry, Lynn K. Barrett, Jennifer L. Hyde, Wesley C. Van Voorhis

published 22 Apr 2021

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Mapping of sequences in the 5’ region and 3’ UTR of tomato ringspot virus RNA2 that facilitate cap-independent translation of reporter transcripts in vitro

Dinesh Babu Paudel, Hélène Sanfaçon

published 09 Apr 2021

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A549 cells contain enlarged mitochondria with independently functional clustered mtDNA nucleoids

Aleksandrs Nasonovs, Miguel Garcia-Diaz, Daniel F. Bogenhagen

published 25 Mar 2021

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Structural analysis of viral ExoN domains reveals polyphyletic hijacking events

Adrián Cruz-González, Israel Muñoz-Velasco, Wolfgang Cottom-Salas, Arturo Becerra, José A. Campillo-Balderas, Ricardo Hernández-Morales, Alberto Vázquez-Salazar, Rodrigo Jácome, Antonio Lazcano

published 17 Mar 2021

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Analysis of small and large subunit rDNA introns from several ectomycorrhizal fungi species

Li-hong Chen, Wei Yan, Ting Wang, Yu Wang, Jian Liu, Zhuo Yu

published 15 Mar 2021

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An apta-aggregation based machine learning assay for rapid quantification of lysozyme through texture parameters

Manoharan Sanjay, Kumar Gaurav, Maria Jesus Gonzalez-Pabon, Julio Fuchs, Susan R. Mikkelsen, Eduardo Cortón

published 08 Mar 2021

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Genetic impacts on thermostability of onco-lncRNA HOTAIR during the development and progression of endometriosis

Cherry Yin-Yi Chang, Chung-Chen Tseng, Ming-Tsung Lai, An-Jen Chiang, Lun-Chien Lo, Chih-Mei Chen, Man-Ju Yen, Li Sun, Li Yang, Tritium Hwang, Fuu-Jen Tsai, Jim Jinn-Chyuan Sheu

published 05 Mar 2021

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Identification of RNA pseudouridine sites using deep learning approaches

Abu Zahid Bin Aziz, Md. Al Mehedi Hasan, Jungpil Shin

published 23 Feb 2021

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Cyp33 binds AU-rich RNA motifs via an extended interface that competitively disrupts the gene repressive Cyp33-MLL1 interaction in vitro

Neil R. Lloyd, Deborah S. Wuttke

published 19 Feb 2021

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Generalized linear models provide a measure of virulence for specific mutations in SARS-CoV-2 strains

Anastasis Oulas, Maria Zanti, Marios Tomazou, Margarita Zachariou, George Minadakis, Marilena M. Bourdakou, Pavlos Pavlidis, George M. Spyrou

published 26 Jan 2021

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PFRED: A computational platform for siRNA and antisense oligonucleotides design

Simone Sciabola, Hualin Xi, Dario Cruz, Qing Cao, Christine Lawrence, Tianhong Zhang, Sergio Rotstein, Jason D. Hughes, Daniel R. Caffrey, Robert V. Stanton

published 22 Jan 2021

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rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families

Lara Sellés Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

published 15 Jan 2021

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