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RNA structure

A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, [ ... ], Fariza Tahi

Identification of potential riboswitch elements in Homo sapiens mRNA 5’UTR sequences using positive-unlabeled machine learning

William S Raymond, Jacob DeRoo, Brian Munsky

Assessing interface accuracy in macromolecular complexes

Olgierd Ludwiczak, Maciej Antczak, Marta Szachniuk

Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly

Sneha Bheemireddy, Ramanathan Sowdhamini, Narayanaswamy Srinivasan

Aligned membranes regulate wound healing via MMP12 secreted by macrophages

Hongli Ma, Limin Gong, [ ... ], Chenbing Wang

Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, [ ... ], Magdalena Kucia

A physically inspired approach to coarse-graining transcriptomes reveals the dynamics of aging

Tao Li, Madhav Mani

Engineered red Opto-mGluR6 Opsins, a red-shifted optogenetic excitation tool, an in vitro study

Hoda Shamsnajafabadi, Zahra-Soheila Soheili, [ ... ], Ali Kashanian

GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

A novel viral RNA detection method based on the combined use of trans-acting ribozymes and HCR-FRET analyses

Leonardo Ferreira da Silva, Aisel Valle Garay, [ ... ], Cíntia Marques Coelho

Peptide nucleic acids can form hairpins and bind RNA-binding proteins

Yichen Zhong, Lorna Wilkinson-White, [ ... ], Ann H. Kwan

Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution

Elaine Nguyen, Jahree A. Sosa, Kevin C. Cassidy, Andrea J. Berman

Nationally endorsed learning objectives to improve course design in introductory biology

Kelly M. Hennessey, Scott Freeman

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