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RNA sequences

Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA

Ivan Dotu, Vinodh Mechery, Peter Clote

published 21 Feb 2014

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Gene Expression-Based Dosimetry by Dose and Time in Mice Following Acute Radiation Exposure

James D. Tucker, George W. Divine, William E. Grever, Robert A. Thomas, Michael C. Joiner, Joseph M. Smolinski, Gregory W. Auner

published 16 Dec 2013

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Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner

Pierre Frange, Laurence Meyer, Matthieu Jung, Cecile Goujard, David Zucman, Sylvie Abel, Patrick Hochedez, Marine Gousset, Olivier Gascuel, Christine Rouzioux, Marie-Laure Chaix, for the ANRS PRIMO Cohort Study Group

published 09 Jul 2013

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Elucidation of miRNAs-Mediated Responses to Low Nitrogen Stress by Deep Sequencing of Two Soybean Genotypes

Yejian Wang, Chanjuan Zhang, Qinnan Hao, Aihua Sha, Rong Zhou, Xinan Zhou, Longping Yuan

published 08 Jul 2013

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Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Samuel Bleckley, Jonathan W. Stone, Susan J. Schroeder

published 27 Dec 2012

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Effective Inhibition of Human Immunodeficiency Virus 1 Replication by Engineered RNase P Ribozyme

Wenbo Zeng, Yuan-Chuan Chen, Yong Bai, Phong Trang, Gia-Phong Vu, Sangwei Lu, Jianguo Wu, Fenyong Liu

published 26 Dec 2012

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Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Evan Senter, Saad Sheikh, Ivan Dotu, Yann Ponty, Peter Clote

published 19 Dec 2012

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The Complex Exogenous RNA Spectra in Human Plasma: An Interface with Human Gut Biota?

Kai Wang, Hong Li, Yue Yuan, Alton Etheridge, Yong Zhou, David Huang, Paul Wilmes, David Galas

published 10 Dec 2012

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Novel Small Noncoding RNAs in Mouse Spermatozoa, Zygotes and Early Embryos

Mitsuoki Kawano, Hideya Kawaji, Valérie Grandjean, Jafar Kiani, Minoo Rassoulzadegan

published 12 Sep 2012

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Conformational Features of Topologically Classified RNA Secondary Structures

Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen

published 05 Jul 2012

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Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

published 18 Feb 2011

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Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

William A. Lorenz, Peter Clote

published 28 Jan 2011

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Re-Inspection of Small RNA Sequence Datasets Reveals Several Novel Human miRNA Genes

Thomas Birkballe Hansen, Jesper Bertram Bramsen, Jørgen Kjems

published 04 Jun 2010

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