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RNA sequences

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Samuel Bleckley, Jonathan W. Stone, Susan J. Schroeder

Accurate Classification of RNA Structures Using Topological Fingerprints

Jiajie Huang, Kejie Li, Michael Gribskov

Elucidation of miRNAs-Mediated Responses to Low Nitrogen Stress by Deep Sequencing of Two Soybean Genotypes

Yejian Wang, Chanjuan Zhang, [ ... ], Longping Yuan

Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Evan Senter, Saad Sheikh, [ ... ], Peter Clote

Effective Inhibition of Human Immunodeficiency Virus 1 Replication by Engineered RNase P Ribozyme

Wenbo Zeng, Yuan-Chuan Chen, [ ... ], Fenyong Liu

RNA Elements in Open Reading Frames of the Bluetongue Virus Genome Are Essential for Virus Replication

Femke Feenstra, René G. P. van Gennip, Sandra G. P. van de Water, Piet A. van Rijn

Network Properties of the Ensemble of RNA Structures

Peter Clote, Amir Bayegan

Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA

Clara Jegousse, Yuedong Yang, [ ... ], Yaoqi Zhou

A Parallel Implementation of the Wuchty Algorithm with Additional Experimental Filters to More Thoroughly Explore RNA Conformational Space

Jonathan W. Stone, Samuel Bleckley, Sean Lavelle, Susan J. Schroeder

Conformational Features of Topologically Classified RNA Secondary Structures

Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen

Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data

Soheila Montaseri, Mohammad Ganjtabesh, Fatemeh Zare-Mirakabad

Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

Multi-agent approach to sequence structure simulation in the RNA World hypothesis

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz

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