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RNA folding

Structural prediction of RNA switches using conditional base-pair probabilities

Amirhossein Manzourolajdad, John L. Spouge

published 12 Jun 2019

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RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari, Ian Wark, Carlo Montemagno

published 05 Apr 2018

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Comparison of protocols and RNA carriers for plasma miRNA isolation. Unraveling RNA carrier influence on miRNA isolation

Luis A. Ramón-Núñez, Laura Martos, Álvaro Fernández-Pardo, Julia Oto, Pilar Medina, Francisco España, Silvia Navarro

published 27 Oct 2017

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Simulating the origins of life: The dual role of RNA replicases as an obstacle to evolution

Natalia Szostak, Jaroslaw Synak, Marcin Borowski, Szymon Wasik, Jacek Blazewicz

published 10 Jul 2017

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Molecular simulations and Markov state modeling reveal the structural diversity and dynamics of a theophylline-binding RNA aptamer in its unbound state

Becka M. Warfield, Peter C. Anderson

published 24 Apr 2017

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The impact of RNA secondary structure on read start locations on the Illumina sequencing platform

Adam Price, Jaishree Garhyan, Cynthia Gibas

published 28 Feb 2017

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Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic

Amirhossein Manzourolajdad, Mileidy Gonzalez, John L. Spouge

published 29 Sep 2016

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VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability

Xiaojun Xu, Shi-Jie Chen

published 22 Sep 2016

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Network Properties of the Ensemble of RNA Structures

Peter Clote, Amir Bayegan

published 21 Oct 2015

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GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies

Mélanie Boudard, Julie Bernauer, Dominique Barth, Johanne Cohen, Alain Denise

published 27 Aug 2015

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An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding

Matan Drory Retwitzer, Ilona Kifer, Supratim Sengupta, Zohar Yakhini, Danny Barash

published 31 Jul 2015

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Free Energy Landscape and Multiple Folding Pathways of an H-Type RNA Pseudoknot

Yunqiang Bian, Jian Zhang, Jun Wang, Jihua Wang, Wei Wang

published 01 Jun 2015

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In Silico Screening Based on Predictive Algorithms as a Design Tool for Exon Skipping Oligonucleotides in Duchenne Muscular Dystrophy

Yusuke Echigoya, Vincent Mouly, Luis Garcia, Toshifumi Yokota, William Duddy

published 27 Mar 2015

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