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RNA-binding proteins

rbpTransformer: A novel deep learning model for prediction of piRNA and mRNA bindings

Ahmet Gürhanlı

published 25 Jun 2025

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Short tandem repeat variants are possibly associated with RNA secondary structure and gene expression

Nick Kinney, Dikshya Pathak, Emma Evans, Paola Arias

published 18 Jun 2025

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Polypyrimidine tract binding proteins PTBP1 and PTBP2 associate with distinct proteins and have distinct post-translational modifications in neuronal nuclear extract

Michael E. Sullivan, Jacob A. Edberg, Christopher I. Nunez, Herbert L. Axelrod, Niroshika M. Keppetipola

published 04 Jun 2025

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Integration of bioinformatics and identification of the role of m6A genes in NAFLD

Jianguo Ma, Rongyi Xu, Renlin Li, Yangyang Fu, Jing Xu, Lei Zhou, Yan Qi

published 28 May 2025

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Distinct modes of interaction within eIF4F-like complexes and susceptibility to the RocA inhibitor for the Trypanosoma brucei EIF4AI translation initiation factor

Danielle M. N. Moura, Amanda L. Soares, Adalúcia da Silva, João L. A. B. Ribeiro, Jack D. Sunter, Ludmila A. Assis, Mark Carrington, Osvaldo P. de Melo Neto

published 09 May 2025

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Enhancement of YTHDF2 plays a protective role in acute IRI models through downregulation of TUG1 expression

Hong-Fei He, Shuang Hou, Xiao-Ya Ma, Song-song Huang, Bo Yang, Jun-Kang Wang, Yuan Xu, Lei Tan, Hai-Yang Li

published 24 Apr 2025

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ATRA-induced NEAT1 upregulation promotes autophagy during APL cell granulocytic differentiation

Doudou Tang, Huihui Wang, Yafeng Jiang, Mingjie Chen, Guangsen Zhang, Shangjie Wu, Yewei Wang

published 23 Dec 2024

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HuD regulates apoptosis in N2a cells by regulating Msi2 expression

Naina Gaikwad, Rucha Sarwade, Sourav Halder, Gaurav Agarwal, Vasudevan Seshadri

published 16 Dec 2024

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The SARS-CoV-2 ORF6 protein inhibits nuclear export of mRNA and spliceosomal U snRNA

Ichiro Taniguchi

published 31 Oct 2024

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GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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Peptide nucleic acids can form hairpins and bind RNA-binding proteins

Yichen Zhong, Lorna Wilkinson-White, Esther Zhang, Biswaranjan Mohanty, Belinda B. Zhang, Madeline S. McRae, Rachel Luo, Thomas A. Allport, Anthony P. Duff, Jennifer Zhao, Serene El-Kamand, Mar-Dean Du Plessis, Liza Cubeddu, Roland Gamsjaeger, Sandro F. Ataide, Ann H. Kwan

published 16 Sep 2024

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hnRNP Q/SYNCRIP interacts with LIN28B and modulates the LIN28B/let-7 axis in human hepatoma cells

Jason Jei-Sheng Chang, Ti Lin, Xin-Yue Jhang, Shih-Peng Chan

published 08 Jul 2024

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Bacteriophage-encoded 24B_1 molecule resembles herpesviral microRNAs and plays a crucial role in the development of both the virus and its host

Sylwia Bloch, Natalia Lewandowska, Joanna Zwolenkiewicz, Paulina Mach, Aleksandra Łukasiak, Mikołaj Olejniczak, Logan W. Donaldson, Grzegorz Węgrzyn, Bożena Nejman-Faleńczyk

published 20 Dec 2023

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