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Ribozymes

Protocol for safe, affordable, and reproducible isolation and quantitation of SARS-CoV-2 RNA from wastewater

Monica Trujillo, Kristen Cheung, Anna Gao, Irene Hoxie, Sherin Kannoly, Nanami Kubota, Kaung Myat San, Davida S. Smyth, John J. Dennehy

published 23 Sep 2021

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Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli

Lea K. Drogalis, Robert T. Batey

published 01 Dec 2020

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Modeling a synthetic aptamer-based riboswitch biosensor sensitive to low hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) concentrations

Michael L. Mayo, Jed O. Eberly, Fiona H. Crocker, Karl J. Indest

published 30 Nov 2020

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Analysis of RNA yield in extracellular vesicles isolated by membrane affinity column and differential ultracentrifugation

Gilberto Gutiérrez García, Gabriela Galicia García, Jessica Zalapa Soto, Andrea Izquierdo Medina, Mariana Rotzinger-Rodríguez, Gustavo Antonio Casas Aguilar, Cynthia Paola López Pacheco, Álvaro Aguayo, Maria Montserrat Aguilar-Hernandez

published 06 Nov 2020

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Multi-agent approach to sequence structure simulation in the RNA World hypothesis

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz

published 28 Aug 2020

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Identification and characterisation of thiamine pyrophosphate (TPP) riboswitch in Elaeis guineensis

Atiqah Subki, Chai Ling Ho, Nur Farhah Nabihan Ismail, Aisamuddin Ardi Zainal Abidin, Zetty Norhana Balia Yusof

published 29 Jul 2020

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Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems

Thomas Jacobsen, Gloria Yi, Hadel Al Asafen, Ashley A. Jermusyk, Chase L. Beisel, Gregory T. Reeves

published 30 Apr 2020

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Development of a minigenome cassette for Lettuce necrotic yellows virus: A first step in rescuing a plant cytorhabdovirus

Ahmad E. C. Ibrahim, Craig J. van Dolleweerd, Pascal M. W. Drake, Julian K-C. Ma

published 05 Mar 2020

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A simple and affordable kinetic assay of nucleic acids with SYBR Gold gel staining

Danielle Guillen, Mika Schievelbein, Kushkumar Patel, Davis Jose, Jonathan Ouellet

published 03 Mar 2020

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Val143 of human ribonuclease H2 is not critical for, but plays a role in determining catalytic activity and substrate specificity

Misato Baba, Kenji Kojima, Takuto Nishimura, Takuya Sugiura, Teisuke Takita, Ryo Uehara, Robert J. Crouch, Kiyoshi Yasukawa

published 18 Feb 2020

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Complex alternative splicing of human Endonuclease V mRNA, but evidence for only a single protein isoform

Natalia Berges, Meh Sameen Nawaz, Tuva Børresdatter Dahl, Lars Hagen, Magnar Bjørås, Jon K. Laerdahl, Ingrun Alseth

published 08 Nov 2019

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Structural prediction of RNA switches using conditional base-pair probabilities

Amirhossein Manzourolajdad, John L. Spouge

published 12 Jun 2019

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Extracting information from RNA SHAPE data: Kalman filtering approach

Sana Vaziri, Patrice Koehl, Sharon Aviran

published 21 Nov 2018

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