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Riboswitches

Insights into Ligand Binding to PreQ₁ Riboswitch Aptamer from Molecular Dynamics Simulations

Zhou Gong, Yunjie Zhao, [ ... ], Yi Xiao

Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria

Sumit Mukherjee, Danny Barash, Supratim Sengupta

Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli

Lea K. Drogalis, Robert T. Batey

Bacillus subtilis RNase Y Activity In Vivo Analysed by Tiling Microarrays

Soumaya Laalami, Philippe Bessières, [ ... ], Harald Putzer

Computational Study of Unfolding and Regulation Mechanism of preQ₁ Riboswitches

Zhou Gong, Yunjie Zhao, Changjun Chen, Yi Xiao

An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding

Matan Drory Retwitzer, Ilona Kifer, [ ... ], Danny Barash

Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Evan Senter, Saad Sheikh, [ ... ], Peter Clote

Identification and characterisation of thiamine pyrophosphate (TPP) riboswitch in Elaeis guineensis

Atiqah Subki, Chai Ling Ho, [ ... ], Zetty Norhana Balia Yusof

The RNA Domain Vc1 Regulates Downstream Gene Expression in Response to Cyclic Diguanylate in Vibrio cholerae

Ankunda T. Kariisa, Kevin Weeks, Rita Tamayo

Extracting information from RNA SHAPE data: Kalman filtering approach

Sana Vaziri, Patrice Koehl, Sharon Aviran

CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, [ ... ], Tamar Schlick

Selection of RNAs for Constructing “Lighting-UP” Biomolecular Switches in Response to Specific Small Molecules

Tamaki Endoh, Naoki Sugimoto

Identification of metE as a Second Target of the sRNA scr5239 in Streptomyces coelicolor

Michael-Paul Vockenhuber, Nona Heueis, Beatrix Suess

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