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Regulatory networks

Leveraging dynamic stability to infer regulation in protein-protein interaction networks: A study of infectious vulnerability in COPD

Joyce Reimer, Jeffrey Page, Pranta Saha, Shichen Shen, Xiaoyu Zhu, Shuo Qian, Manoj Mammen, Jun Qu, Sanjay Sethi, Gordon Broderick

published 05 Sep 2025

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Oscillatory autophagy induction is enabled by an updated AMPK-ULK1 regulatory wiring

Orsolya Kapuy, Marianna Holczer, Luca Csabai, Tamás Korcsmáros

published 26 Dec 2024

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Unraveling the H19/GAS1 axis in recurrent implantation failure: A potential biomarker for diagnosis and insight into immune microenvironment alteration

Li Fan, Fan Zhang, Chunling Yao, Liuying Nong, Jingjing Li, Wenjie Huang

published 05 Jul 2024

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Circular RNA mediated gene regulation in human breast cancer: A bioinformatics analysis

Giulia Fiscon, Alessio Funari, Paola Paci

published 26 Jul 2023

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A computational model of stem cell molecular mechanism to maintain tissue homeostasis

Najme Khorasani, Mehdi Sadeghi, Abbas Nowzari-Dalini

published 30 Jul 2020

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Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data

Eman Badr, Mahmoud ElHefnawi, Lenwood S. Heath

published 18 Nov 2016

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Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data

Taosheng Xu, Thuc Duy Le, Lin Liu, Rujing Wang, Bingyu Sun, Jiuyong Li

published 01 Apr 2016

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MicroRNA and Transcription Factor Mediated Regulatory Network Analysis Reveals Critical Regulators and Regulatory Modules in Myocardial Infarction

Guangde Zhang, Hongbo Shi, Lin Wang, Meng Zhou, Zhenzhen Wang, Xiaoxia Liu, Liang Cheng, Weimin Li, Xueqi Li

published 10 Aug 2015

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RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat –Omics Data

Jonathan Vincent, Pierre Martre, Benjamin Gouriou, Catherine Ravel, Zhanwu Dai, Jean-Marc Petit, Marie Pailloux

published 19 May 2015

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^TMREC: A Database of Transcription Factor and MiRNA Regulatory Cascades in Human Diseases

Shuyuan Wang, Wei Li, Baofeng Lian, Xinyi Liu, Yan Zhang, Enyu Dai, Xuexin Yu, Fanlin Meng, Wei Jiang, Xia Li

published 01 May 2015

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Statistical Distance as a Measure of Physiological Dysregulation Is Largely Robust to Variation in Its Biomarker Composition

Alan A. Cohen, Qing Li, Emmanuel Milot, Maxime Leroux, Samuel Faucher, Vincent Morissette-Thomas, Véronique Legault, Linda P. Fried, Luigi Ferrucci

published 13 Apr 2015

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The Transcriptional Profiling of Glycogenes Associated with Hepatocellular Carcinoma Metastasis

Tianhua Liu, Shu Zhang, Jie Chen, Kai Jiang, Qinle Zhang, Kun Guo, Yinkun Liu

published 18 Sep 2014

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Revisiting Bistability in the Lysis/Lysogeny Circuit of Bacteriophage Lambda

Michael Bednarz, Jennifer A. Halliday, Christophe Herman, Ido Golding

published 25 Jun 2014

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