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Proteomics

Simplifying MS1 and MS2 spectra to achieve lower mass error, more dynamic range, and higher peptide identification confidence on the Bruker timsTOF Pro

Daryl Wilding-McBride, Laura F. Dagley, [ ... ], Andrew I. Webb

Serum amyloid P component and pro-platelet basic protein in extracellular vesicles or serum are novel markers of liver fibrosis in chronic hepatitis C patients

Kumiko Shirai, Hayato Hikita, [ ... ], Tetsuo Takehara

Plasma proteomic analysis to identify potential biomarkers of histologic chorioamnionitis in women with preterm premature rupture of membranes

Ji Eun Lee, Kisoon Dan, [ ... ], Kyo Hoon Park

Comprehensive proteomic quantification of bladder stone progression in a cystinuric mouse model using data-independent acquisitions

Jacob Rose, Nathan Basisty, [ ... ], Birgit Schilling

Pathway importance by graph convolutional network and Shapley additive explanations in gene expression phenotype of diffuse large B-cell lymphoma

Jin Hayakawa, Tomohisa Seki, Yoshimasa Kawazoe, Kazuhiko Ohe

Network pharmacology integrated molecular dynamics reveals the bioactive compounds and potential targets of Tinospora crispa Linn. as insulin sensitizer

Ummu Mastna Zuhri, Erni Hernawati Purwaningsih, Fadilah Fadilah, Nancy Dewi Yuliana

Subtyping of common complex diseases and disorders by integrating heterogeneous data. Identifying clusters among women with lower urinary tract symptoms in the LURN study

Victor P. Andreev, Margaret E. Helmuth, [ ... ], The LURN Study Group

Target and drug predictions for SARS-CoV-2 infection in hepatocellular carcinoma patients

Luhong Wang, Yinan Ding, Chuanyong Zhang, Rong Chen

PlaceWaters: Real-time, explicit interface water sampling during Rosetta ligand docking

Shannon T. Smith, Laura Shub, Jens Meiler

The General Growth Tendency: A tool to improve publication trend reporting by removing record inflation bias and enabling quantitative trend analysis

Joost L. D. Nelis, Gonçalo Rosas da Silva, [ ... ], Christopher T. Elliott

Pilot study evaluating everolimus molecular mechanisms in tuberous sclerosis complex and focal cortical dysplasia

Dominique F. Leitner, Evgeny Kanshin, [ ... ], Orrin Devinsky

A molecular view of amyotrophic lateral sclerosis through the lens of interaction network modules

Klaus Højgaard Jensen, Anna Katharina Stalder, [ ... ], Peter M. A. Groenen

The Immunometabolic Atlas: A tool for design and interpretation of metabolomics studies in immunology

Pascal Maas, Ilona den Hartog, [ ... ], Coen van Hasselt

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