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Proteomics

A Dynamic Analysis of IRS-PKR Signaling in Liver Cells: A Discrete Modeling Approach

Ming Wu, Xuerui Yang, Christina Chan

published 01 Dec 2009

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Chromatin Regulation and Gene Centrality Are Essential for Controlling Fitness Pleiotropy in Yeast

Linqi Zhou, Xiaotu Ma, Michelle N. Arbeitman, Fengzhu Sun

published 30 Nov 2009

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Proteomic and Phospho-Proteomic Profile of Human Platelets in Basal, Resting State: Insights into Integrin Signaling

Amir H. Qureshi, Vineet Chaoji, Dony Maiguel, Mohd Hafeez Faridi, Constantinos J. Barth, Saeed M. Salem, Mudita Singhal, Darren Stoub, Bryan Krastins, Mitsunori Ogihara, Mohammed J. Zaki, Vineet Gupta

published 27 Oct 2009

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Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

Fumio Matsuda, Yoko Shinbo, Akira Oikawa, Masami Yokota Hirai, Oliver Fiehn, Shigehiko Kanaya, Kazuki Saito

published 16 Oct 2009

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Empirical Bayes Analysis of Quantitative Proteomics Experiments

Adam A. Margolin, Shao-En Ong, Monica Schenone, Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub

published 14 Oct 2009

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Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics

Mihaela E. Sardiu, Joshua M. Gilmore, Michael J. Carrozza, Bing Li, Jerry L. Workman, Laurence Florens, Michael P. Washburn

published 06 Oct 2009

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Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse

Erno Lindfors, Peddinti V. Gopalacharyulu, Eran Halperin, Matej Orešič

published 02 Oct 2009

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Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets

Peter B. McGarvey, Hongzhan Huang, Raja Mazumder, Jian Zhang, Yongxing Chen, Chengdong Zhang, Stephen Cammer, Rebecca Will, Margie Odle, Bruno Sobral, Margaret Moore, Cathy H. Wu

published 25 Sep 2009

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Beyond Element-Wise Interactions: Identifying Complex Interactions in Biological Processes

Christophe Ladroue, Shuixia Guo, Keith Kendrick, Jianfeng Feng

published 23 Sep 2009

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Proteomic Interrogation of Androgen Action in Prostate Cancer Cells Reveals Roles of Aminoacyl tRNA Synthetases

Adaikkalam Vellaichamy, Arun Sreekumar, John R. Strahler, Theckelnaycke Rajendiran, Jindan Yu, Sooryanarayana Varambally, Yong Li, Gilbert S. Omenn, Arul M. Chinnaiyan, Alexey I. Nesvizhskii

published 18 Sep 2009

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Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

Jiangning Song, Hao Tan, Khalid Mahmood, Ruby H. P. Law, Ashley M. Buckle, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock

published 17 Sep 2009

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Comparative Proteomic Analysis of the PhoP Regulon in Salmonella enterica Serovar Typhi Versus Typhimurium

Richelle C. Charles, Jason B. Harris, Michael R. Chase, Lauren M. Lebrun, Alaullah Sheikh, Regina C. LaRocque, Tanya Logvinenko, Sean M. Rollins, Abdullah Tarique, Elizabeth L. Hohmann, Ian Rosenberg, Bryan Krastins, David A. Sarracino, Firdausi Qadri, Stephen B. Calderwood, Edward T. Ryan

published 10 Sep 2009

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Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

published 26 Aug 2009

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