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Proteomic databases

OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry

Angelica Arioli, Arianna Dagliati, [ ... ], Nophar Geifman

MCPdb: The bacterial microcompartment database

Jessica M. Ochoa, Kaylie Bair, [ ... ], Todd O. Yeates

Disclosing proteins in the leaves of cork oak plants associated with the immune response to Phytophthora cinnamomi inoculation in the roots: A long-term proteomics approach

Ana Cristina Coelho, Rosa Pires, [ ... ], Patrícia Pinto

Missing value imputation in proximity extension assay-based targeted proteomics data

Michael Lenz, Andreas Schulz, [ ... ], Miguel A. Andrade-Navarro

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Jianhong Ou, Haibo Liu, [ ... ], Lihua Julie Zhu

Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology

Cunxiang Bo, Xiao Geng, [ ... ], Hua Shao

ZnO and TiO₂ nanoparticles alter the ability of Bacillus subtilis to fight against a stress

Elise Eymard-Vernain, Sylvie Luche, Thierry Rabilloud, Cécile Lelong

New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease

Flora Cozzolino, Alfredo Landolfi, [ ... ], Maria Monti

Side chain flexibility and the symmetry of protein homodimers

Yaffa Shalit, Inbal Tuvi-Arad

Methylglyoxal and D-lactate in cisplatin-induced acute kidney injury: Investigation of the potential mechanism via fluorogenic derivatization liquid chromatography-tandem mass spectrometry (FD-LC-MS/MS) proteomic analysis

Shih-Ming Chen, Tsung-Hui Chen, [ ... ], Jen-Ai Lee

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications

George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier

Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer

Darshan Shimoga Chandrashekar, Rachel M. Golonka, [ ... ], Matam Vijay-Kumar

Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea)

Pavel Roudnický, David Potěšil, [ ... ], Martin Kašný

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