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Proteomic databases

Protein-Protein Interaction Site Predictions with Three-Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces

Ching-Tai Chen, Hung-Pin Peng, [ ... ], An-Suei Yang

Quantifying Integrated Proteomic Responses to Iron Stress in the Globally Important Marine Diazotroph Trichodesmium

Joseph T. Snow, Despo Polyviou, [ ... ], Thomas S. Bibby

Global Substrate Profiling of Proteases in Human Neutrophil Extracellular Traps Reveals Consensus Motif Predominantly Contributed by Elastase

Anthony J. O’Donoghue, Ye Jin, [ ... ], Terry W. Hermiston

A rapid methods development workflow for high-throughput quantitative proteomic applications

Yan Chen, Jonathan Vu, [ ... ], Christopher J. Petzold

A Comparison of Methods for Classifying Clinical Samples Based on Proteomics Data: A Case Study for Statistical and Machine Learning Approaches

Dayle L. Sampson, Tony J. Parker, Zee Upton, Cameron P. Hurst

Point Charges Optimally Placed to Represent the Multipole Expansion of Charge Distributions

Ramu Anandakrishnan, Charles Baker, Saeed Izadi, Alexey V. Onufriev

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

Jiangning Song, Hao Tan, [ ... ], James C. Whisstock

Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis

Benjamin Yii Chung Lau, Abrizah Othman

Accuracy and Reproducibility in Quantification of Plasma Protein Concentrations by Mass Spectrometry without the Use of Isotopic Standards

Gertjan Kramer, Yvonne Woolerton, [ ... ], Johannes M. F. G. Aerts

A Measure of the Promiscuity of Proteins and Characteristics of Residues in the Vicinity of the Catalytic Site That Regulate Promiscuity

Sandeep Chakraborty, Basuthkar J. Rao

Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and Metabolism

Christin Siewert, Toni Luge, [ ... ], Michael Kube

Using Bacteria to Determine Protein Kinase Specificity and Predict Target Substrates

Michael F. Chou, Sladjana Prisic, [ ... ], Daniel Schwartz

Transcriptomic Analysis of Toxoplasma Development Reveals Many Novel Functions and Structures Specific to Sporozoites and Oocysts

Heather M. Fritz, Kerry R. Buchholz, [ ... ], John C. Boothroyd

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