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Proteomic databases

SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions

Muhammad Usman Tariq, Fahad Saeed

Proteogenomic analysis of pancreatic cancer subtypes

Doris Kafita, Panji Nkhoma, Mildred Zulu, Musalula Sinkala

Heterogeneity in proline hydroxylation of fibrillar collagens observed by mass spectrometry

Michele Kirchner, Haiteng Deng, Yujia Xu

The influence of dataset homology and a rigorous evaluation strategy on protein secondary structure prediction

Teng-Ruei Chen, Chia-Hua Lo, Sheng-Hung Juan, Wei-Cheng Lo

PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences

Bulat Faezov, Roland L. Dunbrack Jr.

Molecular dynamics analysis of N-acetyl-D-glucosamine against specific SARS-CoV-2’s pathogenicity factors

Ömür Baysal, Naeem Abdul Ghafoor, [ ... ], Volha Kniazeva

Dual proteomics of Drosophila melanogaster hemolymph infected with the heritable endosymbiont Spiroplasma poulsonii

Florent Masson, Samuel Rommelaere, [ ... ], Bruno Lemaitre

OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry

Angelica Arioli, Arianna Dagliati, [ ... ], Nophar Geifman

MCPdb: The bacterial microcompartment database

Jessica M. Ochoa, Kaylie Bair, [ ... ], Todd O. Yeates

Disclosing proteins in the leaves of cork oak plants associated with the immune response to Phytophthora cinnamomi inoculation in the roots: A long-term proteomics approach

Ana Cristina Coelho, Rosa Pires, [ ... ], Patrícia Pinto

Missing value imputation in proximity extension assay-based targeted proteomics data

Michael Lenz, Andreas Schulz, [ ... ], Miguel A. Andrade-Navarro

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Jianhong Ou, Haibo Liu, [ ... ], Lihua Julie Zhu

Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology

Cunxiang Bo, Xiao Geng, [ ... ], Hua Shao

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