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Proteomic databases

Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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Gene excavation and expression analysis of CYP and UGT related to the post modifying stage of gypenoside biosynthesis in Gynostemma pentaphyllum (Thunb.) Makino by comprehensive analysis of RNA and proteome sequencing

Yangmei Zhang, Qicong Chen, Yuanheng Huang, Ruiqiang Zhao, Jian Sun, Xidong Yuan, Huiming Xu, Huiyu Liu, Yaosheng Wu

published 07 Dec 2021

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SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions

Muhammad Usman Tariq, Fahad Saeed

published 29 Oct 2021

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Proteogenomic analysis of pancreatic cancer subtypes

Doris Kafita, Panji Nkhoma, Mildred Zulu, Musalula Sinkala

published 10 Sep 2021

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Heterogeneity in proline hydroxylation of fibrillar collagens observed by mass spectrometry

Michele Kirchner, Haiteng Deng, Yujia Xu

published 31 Aug 2021

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The influence of dataset homology and a rigorous evaluation strategy on protein secondary structure prediction

Teng-Ruei Chen, Chia-Hua Lo, Sheng-Hung Juan, Wei-Cheng Lo

published 14 Jul 2021

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PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences

Bulat Faezov, Roland L. Dunbrack Jr.

published 06 Jul 2021

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Molecular dynamics analysis of N-acetyl-D-glucosamine against specific SARS-CoV-2’s pathogenicity factors

Ömür Baysal, Naeem Abdul Ghafoor, Ragıp Soner Silme, Alexander N. Ignatov, Volha Kniazeva

published 27 May 2021

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Dual proteomics of Drosophila melanogaster hemolymph infected with the heritable endosymbiont Spiroplasma poulsonii

Florent Masson, Samuel Rommelaere, Alice Marra, Fanny Schüpfer, Bruno Lemaitre

published 29 Apr 2021

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OptiMissP: A dashboard to assess missingness in proteomic data-independent acquisition mass spectrometry

Angelica Arioli, Arianna Dagliati, Bethany Geary, Niels Peek, Philip A. Kalra, Anthony D. Whetton, Nophar Geifman

published 15 Apr 2021

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MCPdb: The bacterial microcompartment database

Jessica M. Ochoa, Kaylie Bair, Thomas Holton, Thomas A. Bobik, Todd O. Yeates

published 29 Mar 2021

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Disclosing proteins in the leaves of cork oak plants associated with the immune response to Phytophthora cinnamomi inoculation in the roots: A long-term proteomics approach

Ana Cristina Coelho, Rosa Pires, Gabriela Schütz, Cátia Santa, Bruno Manadas, Patrícia Pinto

published 22 Jan 2021

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Missing value imputation in proximity extension assay-based targeted proteomics data

Michael Lenz, Andreas Schulz, Thomas Koeck, Steffen Rapp, Markus Nagler, Madeleine Sauer, Lisa Eggebrecht, Vincent Ten Cate, Marina Panova-Noeva, Jürgen H. Prochaska, Karl J. Lackner, Thomas Münzel, Kirsten Leineweber, Philipp S. Wild, Miguel A. Andrade-Navarro

published 14 Dec 2020

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