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Proteomic databases

Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity

Danika Lipman, Sandra E. Safo, Thierry Chekouo

published 25 Apr 2022

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A systems radiation biology approach to unravel the role of chronic low-dose-rate gamma-irradiation in inducing premature senescence in endothelial cells

Gabriele Babini, Giorgio Baiocco, Sofia Barbieri, Jacopo Morini, Traimate Sangsuwan, Siamak Haghdoost, Ramesh Yentrapalli, Omid Azimzadeh, Charlotte Rombouts, An Aerts, Roel Quintens, Teni Ebrahimian, Mohammed Abderrafi Benotmane, Raghda Ramadan, Sarah Baatout, Soile Tapio, Mats Harms-Ringdahl, Andrea Ottolenghi

published 14 Mar 2022

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Modular automated bottom-up proteomic sample preparation for high-throughput applications

Yan Chen, Nurgul Kaplan Lease, Jennifer W. Gin, Tadeusz L. Ogorzalek, Paul D. Adams, Nathan J. Hillson, Christopher J. Petzold

published 25 Feb 2022

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Proteomic analysis of the umbilical cord in fetal growth restriction and preeclampsia

Matthew S. Conrad, Miranda L. Gardner, Christine Miguel, Michael A. Freitas, Kara M. Rood, Marwan Ma’ayeh

published 25 Feb 2022

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Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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Gene excavation and expression analysis of CYP and UGT related to the post modifying stage of gypenoside biosynthesis in Gynostemma pentaphyllum (Thunb.) Makino by comprehensive analysis of RNA and proteome sequencing

Yangmei Zhang, Qicong Chen, Yuanheng Huang, Ruiqiang Zhao, Jian Sun, Xidong Yuan, Huiming Xu, Huiyu Liu, Yaosheng Wu

published 07 Dec 2021

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SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions

Muhammad Usman Tariq, Fahad Saeed

published 29 Oct 2021

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Proteogenomic analysis of pancreatic cancer subtypes

Doris Kafita, Panji Nkhoma, Mildred Zulu, Musalula Sinkala

published 10 Sep 2021

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Heterogeneity in proline hydroxylation of fibrillar collagens observed by mass spectrometry

Michele Kirchner, Haiteng Deng, Yujia Xu

published 31 Aug 2021

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The influence of dataset homology and a rigorous evaluation strategy on protein secondary structure prediction

Teng-Ruei Chen, Chia-Hua Lo, Sheng-Hung Juan, Wei-Cheng Lo

published 14 Jul 2021

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PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences

Bulat Faezov, Roland L. Dunbrack Jr.

published 06 Jul 2021

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Molecular dynamics analysis of N-acetyl-D-glucosamine against specific SARS-CoV-2’s pathogenicity factors

Ömür Baysal, Naeem Abdul Ghafoor, Ragıp Soner Silme, Alexander N. Ignatov, Volha Kniazeva

published 27 May 2021

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Dual proteomics of Drosophila melanogaster hemolymph infected with the heritable endosymbiont Spiroplasma poulsonii

Florent Masson, Samuel Rommelaere, Alice Marra, Fanny Schüpfer, Bruno Lemaitre

published 29 Apr 2021

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