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Proteomic databases

Characterization of peptide-protein relationships in protein ambiguity groups via bipartite graphs

Karin Schork, Michael Turewicz, Julian Uszkoreit, Jörg Rahnenführer, Martin Eisenacher

published 21 Oct 2022

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New insights into disordered proteins and regions according to the FOD-M model

Irena Roterman, Katarzyna Stapor, Piotr Fabian, Leszek Konieczny

published 10 Oct 2022

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Proteomic analysis of Masson pine with high resistance to pine wood nematodes

Jingbin GAO, Ting PAN, Xuelian CHEN, Qiang Wei, Liuyi Xu

published 12 Aug 2022

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SARS-CoV-2-positive patients display considerable differences in proteome diversity in urine, nasopharyngeal, gargle solution and bronchoalveolar lavage fluid samples

Javan Okendo, Clarisse Musanabaganwa, Peter Mwangi, Martin Nyaga, Harris Onywera

published 08 Aug 2022

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Predicting compound-protein interaction using hierarchical graph convolutional networks

Danh Bui-Thi, Emmanuel Rivière, Pieter Meysman, Kris Laukens

published 21 Jul 2022

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Simplifying MS1 and MS2 spectra to achieve lower mass error, more dynamic range, and higher peptide identification confidence on the Bruker timsTOF Pro

Daryl Wilding-McBride, Laura F. Dagley, Sukhdeep K. Spall, Giuseppe Infusini, Andrew I. Webb

published 07 Jul 2022

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Subtyping of common complex diseases and disorders by integrating heterogeneous data. Identifying clusters among women with lower urinary tract symptoms in the LURN study

Victor P. Andreev, Margaret E. Helmuth, Gang Liu, Abigail R. Smith, Robert M. Merion, Claire C. Yang, Anne P. Cameron, J. Eric Jelovsek, Cindy L. Amundsen, Brian T. Helfand, Catherine S. Bradley, John O. L. DeLancey, James W. Griffith, Alexander P. Glaser, Brenda W. Gillespie, J. Quentin Clemens, H. Henry Lai, The LURN Study Group

published 10 Jun 2022

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Multi-omic analysis reveals enriched pathways associated with COVID-19 and COVID-19 severity

Danika Lipman, Sandra E. Safo, Thierry Chekouo

published 25 Apr 2022

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A systems radiation biology approach to unravel the role of chronic low-dose-rate gamma-irradiation in inducing premature senescence in endothelial cells

Gabriele Babini, Giorgio Baiocco, Sofia Barbieri, Jacopo Morini, Traimate Sangsuwan, Siamak Haghdoost, Ramesh Yentrapalli, Omid Azimzadeh, Charlotte Rombouts, An Aerts, Roel Quintens, Teni Ebrahimian, Mohammed Abderrafi Benotmane, Raghda Ramadan, Sarah Baatout, Soile Tapio, Mats Harms-Ringdahl, Andrea Ottolenghi

published 14 Mar 2022

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Modular automated bottom-up proteomic sample preparation for high-throughput applications

Yan Chen, Nurgul Kaplan Lease, Jennifer W. Gin, Tadeusz L. Ogorzalek, Paul D. Adams, Nathan J. Hillson, Christopher J. Petzold

published 25 Feb 2022

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Proteomic analysis of the umbilical cord in fetal growth restriction and preeclampsia

Matthew S. Conrad, Miranda L. Gardner, Christine Miguel, Michael A. Freitas, Kara M. Rood, Marwan Ma’ayeh

published 25 Feb 2022

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Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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Gene excavation and expression analysis of CYP and UGT related to the post modifying stage of gypenoside biosynthesis in Gynostemma pentaphyllum (Thunb.) Makino by comprehensive analysis of RNA and proteome sequencing

Yangmei Zhang, Qicong Chen, Yuanheng Huang, Ruiqiang Zhao, Jian Sun, Xidong Yuan, Huiming Xu, Huiyu Liu, Yaosheng Wu

published 07 Dec 2021

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