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Proteomic databases

Protein ligand binding site prediction using graph transformer neural network

Ryuichiro Ishitani, Mizuki Takemoto, Kentaro Tomii

published 06 Aug 2024

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Comparative proteomics reveals that fatty acid metabolism is involved in myocardial adaptation to chronic hypoxic injury

Hu Chen, Shiran Yu, Xiaoyun Zhang, Yujie Gao, Hongqi Wang, Yuankun Li, Dongsheng He, Weikun Jia

published 17 Jun 2024

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Bioinformatics for Dentistry: A secondary database for the genetics of tooth development

Ava K. Chow, Rachel Low, Jerald Yuan, Karen K. Yee, Jaskaranjit Kaur Dhaliwal, Shanice Govia, Nazlee Sharmin

published 06 Jun 2024

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Prognostic biomarkers of intracerebral hemorrhage identified using targeted proteomics and machine learning algorithms

Shubham Misra, Yuki Kawamura, Praveen Singh, Shantanu Sengupta, Manabesh Nath, Zuhaibur Rahman, Pradeep Kumar, Amit Kumar, Praveen Aggarwal, Achal K. Srivastava, Awadh K. Pandit, Dheeraj Mohania, Kameshwar Prasad, Nishant K. Mishra, Deepti Vibha

published 03 Jun 2024

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Propensity score matching as an effective strategy for biomarker cohort design and omics data analysis

Masaki Maekawa, Atsushi Tanaka, Makiko Ogawa, Michael H. Roehrl

published 02 May 2024

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Bioinformatics pipeline for the systematic mining genomic and proteomic variation linked to rare diseases: The example of monogenic diabetes

Ksenia G. Kuznetsova, Jakub Vašíček, Dafni Skiadopoulou, Janne Molnes, Miriam Udler, Stefan Johansson, Pål Rasmus Njølstad, Alisa Manning, Marc Vaudel

published 18 Apr 2024

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Proteomic changes in the hippocampus of large mammals after total-body low dose radiation

Diego Iacono, Kathleen Hatch, Erin K. Murphy, Jeremy Post, Robert N. Cole, Daniel P. Perl, Regina M. Day

published 01 Mar 2024

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Identification of protein signatures for lung cancer subtypes based on BPSO method

Jihan Wang, Hanping Wang, Jing Xu, Qiying Song, Baozhen Zhou, Jingbo Shangguan, Mengju Xue, Yangyang Wang

published 07 Dec 2023

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Molecular signature to predict quality of life and survival with glioblastoma using Multiview omics model

Rayan Nassani, Yahya Bokhari, Bahauddeen M. Alrfaei

published 16 Nov 2023

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Better late than never: Optimising the proteomic analysis of field-collected octopus

Qiaz Q. H. Hua, Clifford Young, Tara L. Pukala, Jasmin C. Martino, Peter Hoffmann, Bronwyn M. Gillanders, Zoe A. Doubleday

published 12 Jul 2023

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Prospective outcome analysis of multiple sclerosis cases reveals candidate prognostic cerebrospinal fluid markers

Elif Everest, Ugur Uygunoglu, Melih Tutuncu, Alper Bulbul, Umut Inci Onat, Mehmetcan Unal, Timucin Avsar, Sabahattin Saip, Ugur Bilge, Eda Tahir Turanli, Aksel Siva

published 20 Jun 2023

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Deep learning on graphs for multi-omics classification of COPD

Yonghua Zhuang, Fuyong Xing, Debashis Ghosh, Brian D. Hobbs, Craig P. Hersh, Farnoush Banaei-Kashani, Russell P. Bowler, Katerina Kechris

published 21 Apr 2023

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The role of data imbalance bias in the prediction of protein stability change upon mutation

Jianwen Fang

published 30 Mar 2023

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